AT3G12550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : XH/XS domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2); Has 27730 Blast hits to 18970 proteins in 1489 species: Archae - 327; Bacteria - 3496; Metazoa - 13128; Fungi - 1662; Plants - 1039; Viruses - 83; Other Eukaryotes - 7995 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3978669..3981372 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74233.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||
| Length | 638 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNNKLSDFEK NLYKKLKSGK LEVKVSYRTF LCPYCPDNKK KVGLYVDILQ HASGVGNSQS KKRSLTEKAS HRALAKYLIK DLAHYATSTI SKRLKARTSF 101: IPAETGDAPI IYDDAQFEKL VWPWKGVLVN IPTTSTEDGR SCTGESGPKL KDELIRRGFN PIRVRTVWDR FGHSGTGIVE FNRDWNGLQD ALVFKKAYEG 201: DGHGKKDWLC GATDSSLYAW LANADDYYRA NILGENLRKM GDLKSIYRFA EEEARKDQKL LQRLNFMVEN KQYRLKKLQI KYSQDSVKLK YETEEKEKIL 301: RAYSEDLTGR QQKSTDHFNR IFADHEKQKV QLESQIKELE IRKLELAKRE AENETQRKIV AKELEQNAAI NSYVQLSALE QQKTREKAQR LAVDHKMQKE 401: KLHKRIAALE RQLDQKQELE LEVQQLKSQL SVMRLVELDS GSEIVNKVET FLRDLSETEG ELAHLNQFNQ DLVVQERKSN DELQEARRAL ISNLRDMGLH 501: IGVKRMGELD TKPFMKAMRI KYCQEDLEDW AVEVIQLWEE YLKDPDWHPF KRIKLETAET IVEVIDEDDE KLRTLKNELG DDAYQAVANA LLEINEYNPS 601: GRYISSELWN FREDRKATLE EGVNSLLEQW NQAKHLKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)