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AT3G19960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myosin 1
Curator
Summary (TAIR10)
member of Myosin-like proteins
Computational
Description (TAIR10)
myosin 1 (ATM1); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex, cell plate, phragmoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50360.1); Has 7475 Blast hits to 6721 proteins in 784 species: Archae - 2; Bacteria - 30; Metazoa - 4940; Fungi - 735; Plants - 649; Viruses - 1; Other Eukaryotes - 1118 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1156-MONOMERBioGrid:6866EMBL:AP002050EMBL:AY091126
EMBL:BT001941EMBL:CP002686EMBL:X69505EnsemblPlants:AT3G19960
EnsemblPlants:AT3G19960.1entrez:821534ExpressionAtlas:Q9LHE9GeneID:821534
Genevisible:Q9LHE9GO:GO:0003774GO:GO:0005524GO:GO:0005768
GO:GO:0005783GO:GO:0006897GO:GO:0009506GO:GO:0009524
GO:GO:0016459hmmpanther:PTHR13140hmmpanther:PTHR13140:SF384HOGENOM:HOG000029608
IntAct:Q9LHE9InterPro:IPR000048InterPro:IPR001609InterPro:IPR027417
iPTMnet:Q9LHE9ncoils:CoilPfam:PF00063Pfam:PF00612
Pfam:Q9LHE9Pfscan:PS50096Pfscan:PS51456PhylomeDB:Q9LHE9
PIR:S33812PRIDE:Q9LHE9PRINTS:PR00193PRO:PR:Q9LHE9
PROSITE:PS50096PROSITE:PS51456ProteinModelPortal:Q9LHE9Proteomes:UP000006548
RefSeq:NP_188630.1SMART:SM00015SMART:SM00242SMR:Q9LHE9
SUPFAM:SSF52540SUPFAM:SSF57997TAIR:AT3G19960tair10-symbols:ATM1
UniGene:At.515UniProt:Q9LHE9
Coordinates (TAIR10) chr3:+:6949787..6956736
Molecular Weight (calculated) 131136.00 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.42
Length 1166 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSQKVTPFMQ SLKSLPADYR FDGSPVSDRL ENSSGASVRL TNSNVPRKGG LRNGVSRTDT AAGDSEDSPY SGHGVFVEEQ SLTDDVDSGA ATMPLPQSDE
0101: RRWSDTSAYA RKKILQSWIQ LPNGNWELGK ILSTSGEESV ISLPEGKVIK VISETLVPAN PDILDGVDDL MQLSYLNEPS VLYNLNYRYN QDMIYTKAGP
0201: VLVAVNPFKE VPLYGNRYIE AYRKKSNESP HVYAIADTAI REMIRDEVNQ SIIISGESGA GKTETAKIAM QYLAALGGGS GIEYEILKTN PILEAFGNAK
0301: TLRNDNSSRF GKLIEIHFSE SGKISGAQIQ TFLLEKSRVV QCAEGERSYH IFYQLCAGAS PALREKLNLT SAHEYKYLGQ SNCYSINGVD DAERFHTVKE
0401: ALDIVHVSKE DQESVFAMLA AVLWLGNVSF TVIDNENHVE PVADESLSTV AKLIGCNINE LTLTLSKRNM RVRNDTIVQK LTLPQAIDAR DALAKSIYSC
0501: LFDWLVEQIN KSLAVGKRRT GRSISILDIY GFESFDKNSF EQFCINYANE RLQQHFNRHL FKLEQEEYIQ DGIDWTRVDF EDNQNCLSLF EKKPLGLLSL
0601: LDEESTFPNG TDLTLANKLK QHLQSNSCFR GDKGKLFTVV HYAGEVTYET TGFLEKNRDL LHSDSIQLLS SCSCLLPQAF ASSMLIQSEK PVVGPLYKAG
0701: GADSQRLSVA TKFKSQLFQL MQRLGNTTPH FIRCIKPNNI QSPGVYEQGL VLQQLRCCGV LEVVRISRSG FPTRMSHQKF SRRYGFLLVE NIADRDPLSV
0801: SVAILHQFNI LPEMYQVGYT KLFFRTGQIG VLEDTRNRTL HGILRVQSSF RGYQARCLLK ELKRGISILQ SFVRGEKIRK EFAELRRRHK AAATIQSQVK
0901: SKIARIQYKG IADASVVIQS AIRGWLVRRC SGDIGWLKSG GAKTNELGEV LVKASVLSEL QRRVLKAEAA LREKEEENDI LQQRLQQYEN RWSEYETKMK
1001: SMEEIWQKQM RSLQSSLSIA KKSLAVEDSA RNSDASVNAS DATDWDSSSN QFRSQTSNGV GSRLQPMSAG LSVIGRLAEE FEQRAQVFGD DAKFLVEVKS
1101: GQVEANLDPD RELRRLKQMF ETWKKDYGGR LRETKLILSK LGSEESSGSM EKVKRKWWGR RNSTRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)