suba logo
AT5G54280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.894
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19369591 (2009): nucleus nuclear matrix
  • PMID:19369591 (2009): plasma membrane
  • PMID:18179725 (2008): endoplasmic reticulum
  • PMID:18179725 (2008): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myosin 2
Curator
Summary (TAIR10)
Type VII myosin gene
Computational
Description (TAIR10)
myosin 2 (ATM2); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5022eggNOG:KOG0160EMBL:CP002688EnsemblPlants:AT5G54280
EnsemblPlants:AT5G54280.1entrez:835516ExpressionAtlas:F4K0A7GeneID:835516
GO:GO:0003774GO:GO:0005524GO:GO:0016459Gramene:AT5G54280.1
hmmpanther:PTHR13140hmmpanther:PTHR13140:SF384InterPro:IPR000048InterPro:IPR001609
InterPro:IPR027417ncoils:CoilPaxDb:F4K0A7Pfam:PF00063
Pfam:PF00612Pfscan:PS50096Pfscan:PS51456PRIDE:F4K0A7
PRINTS:PR00193PROSITE:PS50096PROSITE:PS51456ProteinModelPortal:F4K0A7
Proteomes:UP000006548RefSeq:NP_568806.3SMART:SM00015SMART:SM00242
SMR:F4K0A7STRING:3702.AT5G54280.2SUPFAM:SSF52540TAIR:AT5G54280
tair10-symbols:ATM2tair10-symbols:ATM4tair10-symbols:ATMYOS1UniGene:At.49175
UniGene:At.70236UniProt:F4K0A7
Coordinates (TAIR10) chr5:-:22039606..22044715
Molecular Weight (calculated) 117262.00 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.48
Length 1030 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLSTANVVKV STEELFPANP DILEGVEDLI QLSYLNEPSV LYNLRVRYLQ DVIYSKAGPV LIAVNPFKNV EIYGNDVISA YQKKVMDAPH VYAVADAAYD
0101: EMMREKNQSL IISGESGAGK TETAKFAMQY LAALGGGSCG VEYEILKTTC ILEAFGNAKT SRNANSSRFG KLIEIHFSAM GKICGAKLET FLLEKSRVVQ
0201: LFNGERSYHI FYELCAGASP ILKERLKLKT ASEYTYLSQS DCLTIAGVDD AQKFHKLLEA FDIVQIPKEH QERAFALLAA VLWLGNVSFR VTDNENHVEV
0301: VADEAVANAA MLMGCNTEEL MVVLSTRKLQ AGTDCIAKKL TLRQATDMRD GIAKFIYANL FDWLVEQINI ALEVGKSRTG RSISILDIYG FESFKNNSFE
0401: QFCINYANER LQQHFNRHLF KLEQEEYEED GIDWTKVEFV DNQECLDLIE KKPIGLLSLL DEESNFPKAT DLTFANKLKQ HLKTNSCFKG ERGRAFRVNH
0501: YAGEVLYDTN GFLEKNRDPL PADLINLLSS CDCQLLKLFS TKMRGKSQKP LMLSDSTNQT VGTKFKGQLF KLMNKLENTS PHFIRCIKPN SKQLPRVYEE
0601: DLVLQQLRCC GVLEVVRISR SGYPTRLTHQ EFAGRYGFLL SDKKVAQDPL SVSIAVLKQY DVHPEMYQVG YTKLYLRTGQ IGIFEDRRKK VLQGIVGLQK
0701: HFRGHLSRAY FQNMRKVTLV LQSYIRGENA RRLFDTEAKF HADSVSEAST DELSAVIHLQ SAVRGWLARK HFNSMQRQKE LRNVATKSKR KAGRRISEDK
0801: DIPLEQPQVQ PTSMSDLQKR ILKSEAALSQ KEEENTALRE QLRQFEERWS EYDIKMKSME ETWQKQMSSL QMSLAAARKS LAAESITGQA GGRQDTSISP
0901: FGYDSEDTMS TGTPGVRTPT NKFTNGNTPE LRIRELNGSL NAVNHLAREF DQRRLNFDED ARAIVEVKLG PQATPNGQQQ QHPEDEFRRL KLRFETWKKD
1001: YKARLRDTKA RLHRVDGDKG RHRKWWGKRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)