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AT1G67530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 3478 Blast hits to 3233 proteins in 245 species: Archae - 0; Bacteria - 16; Metazoa - 777; Fungi - 226; Plants - 2201; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink).
Protein Annotations
BioGrid:28295EC:6.3.2.-eggNOG:ENOG410ITMPeggNOG:ENOG410XQ5K
EMBL:AC011020EMBL:AK117197EMBL:BT006484EMBL:CP002684
EnsemblPlants:AT1G67530EnsemblPlants:AT1G67530.1EnsemblPlants:AT1G67530.2entrez:843074
Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:843074Genevisible:Q9CAG5
GO:GO:0004842GO:GO:0016874Gramene:AT1G67530.1Gramene:AT1G67530.2
hmmpanther:PTHR22849hmmpanther:PTHR22849:SF8HOGENOM:HOG000082565InParanoid:Q9CAG5
IntAct:Q9CAG5InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT1G67530OMA:NGRESCI
PaxDb:Q9CAG5Pfam:PF04564Pfam:Q9CAG5Pfscan:PS50176
Pfscan:PS51698PhylomeDB:Q9CAG5PIR:G96698PRIDE:Q9CAG5
PRO:PR:Q9CAG5PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q9CAG5
Proteomes:UP000006548RefSeq:NP_001154455.1RefSeq:NP_176920.1SMART:SM00185
SMART:SM00504SMR:Q9CAG5STRING:3702.AT1G67530.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT1G67530UniGene:At.35639UniGene:At.66850
UniPathway:UPA00143UniProt:Q9CAG5
Coordinates (TAIR10) chr1:+:25308229..25311081
Molecular Weight (calculated) 86348.10 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.31
Length 782 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVTELEENL FAASDAKLHG DMCKELSGVL CKVLSIFPSL EGARPRSKSG IQALCSLHIA LEKAKNILQH CSECSKLYLA ITGDAVLLKF EKAKIALIDG
101: LKRVEDIVPS SIGSQILEIV GELENTRFML DPSEKEVGDQ IIALLQQGKK FDNCNDNTEL EIFHRAATRL SITSSRVALA ERRALKKLID RARAEEDKRK
201: ESIVAYLLHL MRKCSKLFRS EILDENDSPG SYPCSPNEDH GSVHGFGRQL SRFGSLNDKP MNSINSGQMP VPPEELRCPI SLQLMCDPVI IASGQTYERV
301: CIEKWFSDGH NTCPKTQQQL PHISLTPNNC VKGLIASWCE QNGTQIPSGP PESQDLDYWR LALSDSESTK SQSVNSIGSY KLKGVKIVPL EENGTTVVER
401: QNTEESFVSD DDDEEDSDIN VLERYQDLLA VLNEEEGLEK KCKVVEKIRL LLKDDEEARI FMGANGFVEA LLRFLGSAVD DNNAAAQDSG AMALFNLAVN
501: NNRNKELMLT SGVIRLLEKM ISSAESHGSA TALYLNLSCL DEAKSVIGSS QAVPFLVQLL QKEIETQCKL DALHALYNLS TYSPNIPALL SSNIIKSLQG
601: LLASTGENLW IEKSLAVLLN LASSQEGKDE AVSSQGMISS LATVLDMGDT TEQEQAVSCL LILCNGRESC IQMVLQEGVI PSLVSISVNG TPRGREKSQK
701: LLMLFREERQ QRDQPSSNRD EPPQKEPARK SLSAPLSVHG STPASASVQD YEPRVLSKSM SRRKSMARPF SFFWKKSYSV RE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)