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AT1G21450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SCARECROW-like 1
Curator
Summary (TAIR10)
Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family.
Computational
Description (TAIR10)
SCARECROW-like 1 (SCL1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2); Has 2480 Blast hits to 2441 proteins in 303 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2475; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:23982eggNOG:ENOG410IF21eggNOG:ENOG4111XPAEMBL:AC015447
EMBL:AF036300EMBL:AF210731EMBL:AY045833EMBL:AY084492
EMBL:AY096626EMBL:CP002684EnsemblPlants:AT1G21450EnsemblPlants:AT1G21450.1
entrez:838743GeneID:838743Genevisible:Q9SDQ3GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT1G21450.1
hmmpanther:PTHR31636hmmpanther:PTHR31636:SF10HOGENOM:HOG000238577InParanoid:Q9SDQ3
InterPro:IPR005202InterPro:IPR030011KEGG:ath:AT1G21450OMA:FPYQSRP
PANTHER:PTHR31636:SF10PaxDb:Q9SDQ3Pfam:PF03514Pfam:Q9SDQ3
Pfscan:PS50985PhylomeDB:Q9SDQ3PIR:E86347PIR:T51234
PRIDE:Q9SDQ3PRO:PR:Q9SDQ3PROSITE:PS50985ProteinModelPortal:Q9SDQ3
Proteomes:UP000006548RefSeq:NP_173566.1STRING:3702.AT1G21450.1TAIR:AT1G21450
tair10-symbols:SCL1UniGene:At.14825UniProt:Q9SDQ3
Coordinates (TAIR10) chr1:+:7509721..7511502
Molecular Weight (calculated) 66704.10 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.42
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)