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AT5G05140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription elongation factor (TFIIS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT3G10820.2); Has 741 Blast hits to 730 proteins in 116 species: Archae - 0; Bacteria - 16; Metazoa - 377; Fungi - 33; Plants - 253; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEKFeggNOG:ENOG4111IDEEMBL:AB018111EMBL:AY062787
EMBL:AY081599EMBL:CP002688EnsemblPlants:AT5G05140EnsemblPlants:AT5G05140.1
entrez:830396Gene3D:1.20.930.10GeneID:830396Genevisible:Q9FHK9
GO:GO:0003677GO:GO:0003746GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT5G05140.1hmmpanther:PTHR15141hmmpanther:PTHR15141:SF40
HOGENOM:HOG000241439InParanoid:Q9FHK9InterPro:IPR003617InterPro:IPR017923
iPTMnet:Q9FHK9KEGG:ath:AT5G05140OMA:NTSREHEPaxDb:Q9FHK9
Pfam:PF08711Pfam:Q9FHK9Pfscan:PS51319PhylomeDB:Q9FHK9
PRIDE:Q9FHK9PRO:PR:Q9FHK9PROSITE:PS51319ProteinModelPortal:Q9FHK9
Proteomes:UP000006548RefSeq:NP_196133.3SMART:SM00509SMR:Q9FHK9
STRING:3702.AT5G05140.1SUPFAM:SSF47676TAIR:AT5G05140UniGene:At.21997
UniProt:Q9FHK9
Coordinates (TAIR10) chr5:+:1520353..1522297
Molecular Weight (calculated) 49137.50 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.92
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MKASGSLDSW REYFRRRGDS DIFGIIDHAI MVAATDCPNK FKSRRDKIAE LLFSCRVNRC VGCDHLELSV PGDDEANRGT TGNGGGGTAV DEDYEVAGGS
101: KESKANSSRG DNNQIVSNYT FDEAEALSDE IEEFSVVSKE VARIKEILLN KEDEPNSVLL DSLRHLKLMS LNVDILKSTE IGKAVNGLRK HSSDKIRQLA
201: KTLIAEWKEL VDQWVNTTKE ITGAEGTPES ANPSVLDEEE AFPSLPYDVD IFTPEPNGFE ISHFFDSLDF DGNPRNSEEH NTSREHERRP QNIAKRKPEG
301: TQMRIQDAPF RSIKPSSATD FDGTRRPVKQ STEQRMKNET VSVHKSEKPM IQRKPVVTEQ KRKAPGPQQE KLKGLDADAK FEFAKRKLQE SYQHHENAKK
401: QRTIQVLEMI PKQGSAQKPQ LKRPGMSNRN WANGRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)