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AT5G27520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (peroxisomal marker)

At5g-GFP-27520
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peroxisomal adenine nucleotide carrier 2
Curator
Summary (TAIR10)
encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.
Computational
Description (TAIR10)
peroxisomal adenine nucleotide carrier 2 (PNC2); CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: peroxisomal adenine nucleotide carrier 1 (TAIR:AT3G05290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZNC0eggNOG:KOG0769EMBL:AC007123EMBL:AC007478
EMBL:AY063892EMBL:AY122919EMBL:CP002688EnsemblPlants:AT5G27520
EnsemblPlants:AT5G27520.1entrez:832812Gene3D:1.50.40.10GeneID:832812
Genevisible:Q8VZS0GO:GO:0003735GO:GO:0005347GO:GO:0005777
GO:GO:0005778GO:GO:0006412GO:GO:0006635GO:GO:0015217
GO:GO:0015297GO:GO:0015866GO:GO:0015867GO:GO:0016021
GO:GO:0080024Gramene:AT5G27520.1hmmpanther:PTHR24089hmmpanther:PTHR24089:SF282
HOGENOM:HOG000212132InParanoid:Q8VZS0InterPro:IPR018108InterPro:IPR023395
KEGG:ath:AT5G27520OMA:WGNAFDGPaxDb:Q8VZS0Pfam:PF00153
Pfam:Q8VZS0Pfscan:PS50920PhylomeDB:Q8VZS0PRIDE:Q8VZS0
PRO:PR:Q8VZS0PROSITE:PS50920ProteinModelPortal:Q8VZS0Proteomes:UP000006548
RefSeq:NP_198104.1SMR:Q8VZS0STRING:3702.AT5G27520.1SUPFAM:0048588
SUPFAM:SSF103506TAIR:AT5G27520tair10-symbols:PNC2TCDB:2.A.29.20.2
UniGene:At.19841UniProt:Q8VZS0
Coordinates (TAIR10) chr5:-:9714664..9716244
Molecular Weight (calculated) 35161.00 Da
IEP (calculated) 10.45
GRAVY (calculated) 0.07
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVDLDLESI SEATSGAIGS LLSTTILYPL DTCKSKFQAE IRVRGQQKYR YLSDVFWEAI SSGNVLSLYQ GLGTKNLQSF ISSFIYFYSY SYFKRLHSQR
101: IGSKSIGTKA NLLIAAAAGA CTSVLTQPLD TASSRMQTSE FGKSKGLWKT LTDGSWGNAF DGLGISLLLT SNPAIQYTVF DQLKQNLLEK GKAKSNKDSS
201: PVVLSAFMAF VLGAVSKSAA TVITYPAIRC KVMIQAADDS KENEAKKPRK RIRKTIPGVV YAIWKKEGIL GFFKGLQAQI LKTVLSSALL LMIKEKITAT
301: TWILILAIRT LFVTKARLKS P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)