suba logo
AT1G07530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SCARECROW-like 14
Curator
Summary (TAIR10)
Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.
Computational
Description (TAIR10)
SCARECROW-like 14 (SCL14); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29060.1); Has 2535 Blast hits to 2449 proteins in 301 species: Archae - 0; Bacteria - 12; Metazoa - 27; Fungi - 4; Plants - 2483; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:22508eggNOG:ENOG410IFAEeggNOG:ENOG410YMPHEMBL:AC022464
EMBL:AF036309EMBL:CP002684EnsemblPlants:AT1G07530EnsemblPlants:AT1G07530.1
entrez:837267ExpressionAtlas:Q9XE58GeneID:837267Genevisible:Q9XE58
GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0006351
GO:GO:0006355GO:GO:0009410GO:GO:0045893Gramene:AT1G07530.1
HOGENOM:HOG000238576InParanoid:Q9XE58InterPro:IPR005202iPTMnet:Q9XE58
KEGG:ath:AT1G07530OMA:CMFHDSLPaxDb:Q9XE58Pfam:PF03514
Pfam:Q9XE58Pfscan:PS50985PhylomeDB:Q9XE58PIR:T51232
PRIDE:Q9XE58PRO:PR:Q9XE58PROSITE:PS50985ProteinModelPortal:Q9XE58
Proteomes:UP000006548RefSeq:NP_172233.1STRING:3702.AT1G07530.1TAIR:AT1G07530
tair10-symbols:ATGRAS2tair10-symbols:GRAS2tair10-symbols:SCL14UniGene:At.21921
UniProt:B9DFJ3UniProt:Q9XE58
Coordinates (TAIR10) chr1:-:2313828..2316137
Molecular Weight (calculated) 85933.50 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.54
Length 769 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)