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AT2G39940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.
Computational
Description (TAIR10)
CORONATINE INSENSITIVE 1 (COI1); BEST Arabidopsis thaliana protein match is: GRR1-like protein 1 (TAIR:AT4G03190.1); Has 1742 Blast hits to 1380 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 463; Fungi - 47; Plants - 1165; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
BioGrid:3919DIP:DIP-31324NeggNOG:ENOG410XQ54eggNOG:KOG1947
EMBL:AF002109EMBL:AF036340EMBL:AY045625EMBL:AY133556
EMBL:CP002685EMBL:EF470606EMBL:EF470607EMBL:EF470608
EMBL:EF470609EMBL:EF470610EMBL:EF470611EMBL:EF470612
EMBL:EF470613EMBL:EF470614EMBL:EF470615EMBL:EF470616
EMBL:EF470617EMBL:EF470619EMBL:EF470620EMBL:EF470621
EMBL:EF470622EMBL:EF470623EMBL:EF470624EnsemblPlants:AT2G39940
EnsemblPlants:AT2G39940.1entrez:818581EvolutionaryTrace:O04197Gene3D:3.80.10.10
GeneID:818581Genevisible:O04197GO:GO:0006952GO:GO:0009611
GO:GO:0009625GO:GO:0009641GO:GO:0009753GO:GO:0009861
GO:GO:0009867GO:GO:0009901GO:GO:0009909GO:GO:0010118
GO:GO:0010218GO:GO:0016567GO:GO:0031146GO:GO:0031348
GO:GO:0042742GO:GO:0050832Gramene:AT2G39940.1hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF428HOGENOM:HOG000238474InParanoid:O04197IntAct:O04197
InterPro:IPR032675KEGG:ath:AT2G39940KO:K13463OMA:RFAIGCT
PaxDb:O04197PDB:3OGKPDB:3OGLPDB:3OGM
PDBsum:3OGKPDBsum:3OGLPDBsum:3OGMPfam:O04197
PhylomeDB:O04197PIR:T52139PRIDE:O04197PRO:PR:O04197
ProteinModelPortal:O04197Proteomes:UP000006548RefSeq:NP_565919.1SMR:O04197
STRING:3702.AT2G39940.1SUPFAM:SSF52047TAIR:AT2G39940tair10-symbols:COI1
UniGene:At.20831UniGene:At.71018UniPathway:UPA00143UniProt:O04197
Coordinates (TAIR10) chr2:-:16672848..16675486
Molecular Weight (calculated) 67669.20 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.24
Length 592 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)