AT2G17020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G55590.1); Has 4669 Blast hits to 2409 proteins in 221 species: Archae - 0; Bacteria - 377; Metazoa - 1922; Fungi - 539; Plants - 1335; Viruses - 3; Other Eukaryotes - 493 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7396559..7398787 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72286.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTTVVCGG GGDVEGCDGE RSLDLLPAAL LETIMTKLDV ASLCSLASTC KTLKSCVTRV LTFTPNFHIF NVSLSMETVR PLLFPNQQLS SLKLDCGRLG 101: NSAIDILVRP SLREISLHNC RDFSGDLISE IGRKCKDLRL LCLGSVAEKV GRSISRCALE DLLNGCSHLE VLALMFDLSL YLRPGDGRIF GLVSDRLTHL 201: ELGHITSRMM TQLLTSTEIS GQDSNRVTTS TVLQNVQRLR LSVDCITDAV VKAISKSLPS LIDLDIRDAP LEDPRQVSDL TDFGLHEINQ NGKLKHLSLI 301: RSQEFHPTYF RRVSDQGMLF LADKCLGMET ICLGGFCRVT DAGFKTILHS CASLSKFSIY HGPKLTDLVF HDILATTLSL SHVSLRRCHL LTDHAIQKLA 401: SSLKLENLDL RGCRNLRDET LTAVSHLPKL KVLLLDGADI SDTGLSYLKE GVLDSLVSLS VRGCRNLTDK FMSTLFDGSS KLALRELDLS NLPNLTDAAI 501: FALAKSGAPI TKLQLRECRL IGDASVMALA STRVYEDECP GSSLCLLDLY DCGGITQLSF KWLKKPFFPR LKWLGITGSV NRDIVDALAR RRPHLQVSCR 601: GEELGNDGED DWDSADIHQH IEAQEDELEQ WILGDEGDVE MEDAEDESEE DASEED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)