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AT1G51690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
Curator
Summary (TAIR10)
55 kDa B regulatory subunit of phosphatase 2A mRNA,
Computational
Description (TAIR10)
protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (B ALPHA); FUNCTIONS IN: nucleotide binding, protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A, regulatory subunit PR55 (TAIR:AT1G17720.1); Has 958 Blast hits to 924 proteins in 264 species: Archae - 0; Bacteria - 26; Metazoa - 505; Fungi - 177; Plants - 117; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
BioGrid:26819eggNOG:COG5170eggNOG:KOG1354EMBL:AC025294
EMBL:AK230310EMBL:AY120756EMBL:BT000109EMBL:CP002684
EMBL:U18129EnsemblPlants:AT1G51690EnsemblPlants:AT1G51690.1entrez:841594
ExpressionAtlas:Q38821Gene3D:2.130.10.10GeneID:841594Genevisible:Q38821
GO:GO:0000159GO:GO:0008601hmmpanther:PTHR11871hmmpanther:PTHR11871:SF11
HOGENOM:HOG000089745InParanoid:Q38821InterPro:IPR000009InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR018067InterPro:IPR019775
iPTMnet:Q38821PANTHER:PTHR11871PaxDb:Q38821Pfam:PF00400
Pfam:Q38821PhylomeDB:Q38821PIR:G96555PIR:S55889
PIRSF:PIRSF037309PRIDE:Q38821PRINTS:PR00600PRO:PR:Q38821
PROSITE:PS00678PROSITE:PS01024PROSITE:PS01025ProteinModelPortal:Q38821
Proteomes:UP000006548Reactome:R-ATH-69231Reactome:R-ATH-975957RefSeq:NP_564595.1
RefSeq:NP_974003.1scanprosite:PS00678scanprosite:PS01024scanprosite:PS01025
SMART:SM00320SMR:Q38821STRING:3702.AT1G51690.3SUPFAM:SSF50978
TAIR:AT1G51690tair10-symbols:ATB ALPHAtair10-symbols:B ALPHAUniGene:At.1589
UniProt:Q38821
Coordinates (TAIR10) chr1:+:19166218..19169974
Molecular Weight (calculated) 56937.50 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.41
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGGDEVVAA SADPSLPLEW RFSQVFGERS AGEEVQEVDI ISAIEFDNSG NHLATGDRGG RVVLFERTDT NNSSGTRREL EEADYPLRHP EFRYKTEFQS
101: HDPEFDYLKS LEIEEKINKI RWCQTANGAL FLLSTNDKTI KFWKVQDKKI KKICDMNSDP SRTVGNGTVA SSSNSNITNS CLVNGGVSEV NNSLCNDFSL
201: PAGGISSLRL PVVVTSHESS PVARCRRVYA HAHDYHINSI SNNSDGETFI SADDLRINLW NLEISNQSFN IVDVKPAKME DLSEVITSAE FHPTHCNMLA
301: YSSSKGSIRL IDLRQSALCD SHSKLFEEPE QAGPKSFFTE IIASVSDIKF AKEGRYLLSR DYMTLKLWDI NMDAGPVATF QVHEYLKPKL CDLYENDSIF
401: DKFECCISGN GLRAATGSYS NLFRVFGVAP GSTETATLEA SRNPMRRHVP IPSRPSRALS SITRVVSRGS ESPGVDGNTN ALDYTTKLLH LAWHPNENSI
501: ACAAANSLYM YYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)