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AT1G17720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein phosphatase 2A, regulatory subunit PR55
Curator
Summary (TAIR10)
type 2A protein serine/threonine phosphatase 55 kDa B
Computational
Description (TAIR10)
ATB BETA; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.1); Has 1080 Blast hits to 1028 proteins in 280 species: Archae - 0; Bacteria - 91; Metazoa - 514; Fungi - 212; Plants - 124; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5170eggNOG:KOG1354EMBL:AK226540EnsemblPlants:AT1G17720
EnsemblPlants:AT1G17720.1entrez:838348ExpressionAtlas:Q0WW19Gene3D:2.130.10.10
GeneID:838348GO:GO:0000159GO:GO:0008601Gramene:AT1G17720.1
hmmpanther:PTHR11871hmmpanther:PTHR11871:SF11InterPro:IPR000009InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR018067InterPro:IPR019775
iPTMnet:Q0WW19KEGG:ath:AT1G17720KO:K04354OMA:HACRKDA
PANTHER:PTHR11871PaxDb:Q0WW19Pfam:PF00400Pfam:Q39247
PhylomeDB:Q0WW19PIRSF:PIRSF037309PRIDE:Q0WW19PRINTS:PR00600
PROSITE:PS00678PROSITE:PS01024PROSITE:PS01025ProteinModelPortal:Q0WW19
RefSeq:NP_564033.1scanprosite:PS00678scanprosite:PS01024scanprosite:PS01025
SMART:SM00320SMR:Q0WW19STRING:3702.AT1G17720.1SUPFAM:SSF50978
TAIR:AT1G17720tair10-symbols:ATB BETAUniGene:At.19970UniProt:Q0WW19
UniProt:Q39247
Coordinates (TAIR10) chr1:-:6093949..6098065
Molecular Weight (calculated) 56277.90 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.54
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGGDDAATS GPPPSLEWRF SQVFGERTAG EEVQEVDIIS AIEFDKSGDH LATGDRGGRV VLFERTDTKD HGGSRKDLEQ TDYPVRHPEF RYKTEFQSHE
101: PEFDYLKSLE IEEKINKIRW CQPANGALFL LSTNDKTIKY WKVQEKKIKK ISEMNIDPSE SSNIPPQLVT NGLPADKGHD YLSKDFSFPP GGIPSLRLPV
201: VVTSQETNLV ARCRRVYAHA HDYHINSISN SSDGETFISA DDLRVNLWNL EISNQSFNIV DVKPTNMEDL TEVITSAEFH PIHCNMLAYS SSKGSIRLID
301: MRQSALCDSH TKLFEEPEAP GSRSFFTEII ASISDIKFSK DGRYILSRDY MTLKLWDINM DSGPVASYQV HEHLRPRLCD LYENDSIFDK FECCLSGDGL
401: RVATGSYSNL FRVFGASQGS TEAATLEASK NPMRRQIQTP ARPSRSIGSM TRVVRRGSES PGTEANGNAY DFTTKLLHMA WHPTENSIAC AAANSLYMYY
501: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)