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AT4G17880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Basic helix-loop-helix (bHLH) DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT5G46760.1); Has 4061 Blast hits to 3773 proteins in 423 species: Archae - 0; Bacteria - 20; Metazoa - 552; Fungi - 119; Plants - 3303; Viruses - 13; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
BioGrid:12804DIP:DIP-61779NeggNOG:ENOG410IGFUeggNOG:ENOG410YCJJ
EMBL:AF251689EMBL:AK221507EMBL:AL021889EMBL:AL161547
EMBL:CP002687EnsemblPlants:AT4G17880EnsemblPlants:AT4G17880.1entrez:827511
Gene3D:4.10.280.10GeneID:827511Genevisible:O49687GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0006952GO:GO:0009718GO:GO:0043425GO:GO:0045893
Gramene:AT4G17880.1hmmpanther:PTHR11514hmmpanther:PTHR11514:SF43HOGENOM:HOG000238207
InParanoid:O49687InterPro:IPR011598InterPro:IPR025610KEGG:ath:AT4G17880
ncoils:CoilPaxDb:O49687Pfam:O49687Pfam:PF00010
Pfam:PF14215Pfscan:PS50888PhylomeDB:O49687PIR:T05074
PRIDE:O49687PRO:PR:O49687PROSITE:PS50888ProteinModelPortal:O49687
Proteomes:UP000006548RefSeq:NP_193522.1SMART:SM00353SMR:O49687
STRING:3702.AT4G17880.1SUPFAM:SSF47459TAIR:AT4G17880UniGene:At.28316
UniProt:O49687
Coordinates (TAIR10) chr4:-:9933702..9935471
Molecular Weight (calculated) 64592.00 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.66
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)