AT3G04140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G01750.1); Has 23671 Blast hits to 13225 proteins in 615 species: Archae - 38; Bacteria - 1852; Metazoa - 11528; Fungi - 2058; Plants - 2257; Viruses - 72; Other Eukaryotes - 5866 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1087063..1089106 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72360.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPPPIFPLRW ESTGDQWWYA SPIDCAAANG LYDVVIELLH QDTNLLVKLT SLRRIRRLET VWDDGDGNNF HVALNRSRVA RRLLEECEIG NGDNSLIRAG 101: YGGWLLYTAA SAGDLEFVKK LLERDPLLVF GEGEYGVTDI LYAAARGRSD DVFRLLLDFA LLPADIAGVE EIDGEKLTEK QLIVKEEMVK RGVHSAARGG 201: HVAILDELLL ANKYDAVAKL RDAYGSTLLH SASSRAQIQV VKYLISKYDS IMEVKDSHGN TALHIAAYKG HLDVVEALIN ESPPLISIVN GDGDTFLHTV 301: VSGFAASGFK RLDRQMELLK MLVSRSWSVD FSEIVNVRNC NGRTVIHLAV MDNLNAVRPD VVEILMRIPG VDLNVVDSYG MTAVDLLKRQ TPQTVVSDLL 401: IKRLVSAGGR SNCGEKVSRL REERYGFCGS PGTSFEISDS EIFLFTAART DKTAANAELS PDRESFDGIS ECSTEISTHS KRKRRGGGGT GARLKLLLRW 501: AKREESEENR RLSGDVNNRR VPLREMYSPS SCSRGKAFPM RTESGDLPSL SVRLKFTQGL MKGVVVQESP RFVFSPPAVS DYSRAPSSAC STPFQTFSSE 601: LGRRTPAMKK QGSFMNRYLC FGGKGLAIDG SSEMISNGSG HRPQSFKRVM SSLVSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)