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AT4G26850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
Curator
Summary (TAIR10)
Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.
Computational
Description (TAIR10)
vitamin c defective 2 (VTC2); FUNCTIONS IN: in 8 functions; INVOLVED IN: response to jasmonic acid stimulus, L-ascorbic acid biosynthetic process, defense response to bacterium, response to heat, defense response by callose deposition in cell wall; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases (TAIR:AT5G55120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G26850-MONOMERBioGrid:14079BRENDA:2.7.7.69EC:2.7.7.69
eggNOG:ENOG4111FR6eggNOG:KOG2720EMBL:AF508793EMBL:AK226394
EMBL:AL035440EMBL:AL161565EMBL:AY056134EMBL:AY093138
EMBL:BT006589EMBL:CP002687EnsemblPlants:AT4G26850EnsemblPlants:AT4G26850.1
entrez:828792GeneID:828792Genevisible:Q8RWE8GO:GO:0000166
GO:GO:0005085GO:GO:0005634GO:GO:0005737GO:GO:0006006
GO:GO:0008928GO:GO:0009408GO:GO:0009753GO:GO:0010471
GO:GO:0010472GO:GO:0010473GO:GO:0010474GO:GO:0010475
GO:GO:0016787GO:GO:0019853GO:GO:0042742GO:GO:0052544
GO:GO:0080046GO:GO:0080048Gramene:AT4G26850.1gramene_pathway:2.4.1.-
gramene_pathway:2.7.7.-gramene_pathway:PWY-882gramene_pathway:PWY4FS-12gramene_pathway:PWY4FS-13
hmmpanther:PTHR20884hmmpanther:PTHR20884:SF10HOGENOM:HOG000006065InParanoid:Q8RWE8
IntAct:Q8RWE8InterPro:IPR026506iPTMnet:Q8RWE8KEGG:ath:AT4G26850
KO:K14190OMA:KSNRTHGPANTHER:PTHR20884PaxDb:Q8RWE8
Pfam:Q8RWE8PhylomeDB:Q8RWE8PIR:T04808PRIDE:Q8RWE8
PRO:PR:Q8RWE8ProteinModelPortal:Q8RWE8Proteomes:UP000006548RefSeq:NP_567759.1
SABIO-RK:Q8RWE8STRING:3702.AT4G26850.1TAIR:AT4G26850tair10-symbols:VTC2
UniGene:At.23783UniGene:At.74980UniPathway:UPA00990UniProt:Q8RWE8
Coordinates (TAIR10) chr4:-:13499262..13501145
Molecular Weight (calculated) 48972.60 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.16
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)