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AT1G12280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LRR and NB-ARC domains-containing disease resistance protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Protein Annotations
BioGrid:23022eggNOG:COG4886eggNOG:KOG4658EMBL:AC025416
EMBL:CP002684EnsemblPlants:AT1G12280EnsemblPlants:AT1G12280.1entrez:837782
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:837782Genevisible:P60838
GO:GO:0005524GO:GO:0006952GO:GO:0043531Gramene:AT1G12280.1
hmmpanther:PTHR23155hmmpanther:PTHR23155:SF639HOGENOM:HOG000238348InParanoid:P60838
InterPro:IPR001611InterPro:IPR002182InterPro:IPR027417InterPro:IPR032675
iPTMnet:P60838KEGG:ath:AT1G12280MINT:MINT-8063441ncoils:Coil
OMA:ENANIIIPaxDb:P60838Pfam:P60838Pfam:PF00931
Pfam:PF13855PhylomeDB:P60838PRIDE:P60838PRO:PR:P60838
ProteinModelPortal:P60838Proteomes:UP000006548RefSeq:NP_172692.1SMR:P60838
STRING:3702.AT1G12280.1SUPFAM:SSF52058SUPFAM:SSF52540TAIR:AT1G12280
UniGene:At.42083UniProt:P60838
Coordinates (TAIR10) chr1:-:4174875..4177559
Molecular Weight (calculated) 102647.00 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.13
Length 894 amino acids
Sequence (TAIR10)
(BLAST)
001: MGACLTLSFS CDEVVNQISQ GLCINVGYIC ELSKNVVAMK KDMEVLKKKR DDVKRRVDIE EFTRRRERLS QVQGWLTNVS TVENKFNELL TTNDAELQRL
101: CLFGFCSKNV KMSYLYGKRV VLMLKEIESL SSQGDFDTVT LATPIARIEE MPIQPTIVGQ ETMLERVWTR LTEDGDEIVG LYGMGGVGKT TLLTRINNKF
201: SEKCSGFGVV IWVVVSKSPD IHRIQGDIGK RLDLGGEEWD NVNENQRALD IYNVLGKQKF VLLLDDIWEK VNLEVLGVPY PSRQNGCKVV FTTRSRDVCG
301: RMRVDDPMEV SCLEPNEAWE LFQMKVGENT LKGHPDIPEL ARKVAGKCCG LPLALNVIGE TMACKRMVQE WRNAIDVLSS YAAEFPGMEQ ILPILKYSYD
401: NLNKEQVKPC FLYCSLFPED YRMEKERLID YWICEGFIDE NESRERALSQ GYEIIGILVR ACLLLEEAIN KEQVKMHDVV REMALWIASD LGEHKERCIV
501: QVGVGLREVP KVKNWSSVRR MSLMENEIEI LSGSPECLEL TTLFLQKNDS LLHISDEFFR CIPMLVVLDL SGNSSLRKLP NQISKLVSLR YLDLSWTYIK
601: RLPVGLQELK KLRYLRLDYM KRLKSISGIS NISSLRKLQL LQSKMSLDMS LVEELQLLEH LEVLNISIKS SLVVEKLLNA PRLVKCLQIL VLRGVQEESS
701: GVLTLPDMDN LNKVIIRKCG MCEIKIERKT LSLSSNRSPK TQFLHNLSTV HISSCDGLKD LTWLLFAPNL TSLEVLDSEL VEGIINQEKA MTMSGIIPFQ
801: KLESLRLHNL AMLRSIYWQP LSFPCLKTIH ITKCPELRKL PLDSEIAIRD EELVIKYQEE EWLERVEWDN EATRLRFLPF FKFFGPEWQV SYVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)