AT1G12290.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.969 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; EXPRESSED IN: stem, inflorescence meristem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 16903 Blast hits to 15496 proteins in 648 species: Archae - 22; Bacteria - 963; Metazoa - 2036; Fungi - 239; Plants - 13383; Viruses - 4; Other Eukaryotes - 256 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:4178593..4181247 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100508.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 884 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGCVSVQVS CDQLLNHLGR CFCRKLYYIQ NIKENLTSLE EAMEDLKALR DDLLRKVQTA EEGGLQRLHQ IKVWLKRVKT IESQFNDLDS SRTVELQRLC 101: CCGVGSRNLR LSYDYGRRVF LMLNIVEDLK SKGIFEEVAH PATRAVGEER PLQPTIVGQE TILEKAWDHL MDDGTKIMGL YGMGGVGKTT LLTQINNRFC 201: DTDDGVEIVI WVVVSGDLQI HKIQKEIGEK IGFIGVEWNQ KSENQKAVDI LNFLSKKRFV LLLDDIWKRV ELTEIGIPNP TSENGCKIAF TTRCQSVCAS 301: MGVHDPMEVR CLGADDAWDL FKKKVGDITL SSHPDIPEIA RKVAQACCGL PLALNVIGET MACKKTTQEW DRAVDVSTTY AANFGAVKER ILPILKYSYD 401: NLESESVKTC FLYCSLFPED DLIEKERLID YWICEGFIDG DENKKGAVGE GYEILGTLVC ASLLVEGGKF NNKSYVKMHD VVREMALWIA SDLRKHKDNC 501: IVRAGFRLNE IPKVKDWKVV SRMSLVNNRI KEIHGSPECP KLTTLFLQDN RHLVNISGEF FRSMPRLVVL DLSWNVNLSG LPDQISELVS LRYLDLSYSS 601: IGRLPVGLLK LKKLMHLNLE SMLCLESVSG IDHLSNLKTV RLLNLRMWLT ISLLEELERL ENLEVLTIEI ISSSALEQLL CSHRLVRCLQ KVSVKYLDEE 701: SVRILTLPSI GDLREVFIGG CGMRDIIIER NTSLTSPCFP NLSKVLITGC NGLKDLTWLL FAPNLTHLNV WNSRQIEEII SQEKASTADI VPFRKLEYLH 801: LWDLPELKSI YWNPLPFPCL NQINVQNKCR KLTKLPLDSQ SCIVAGEELV IQYGDEEWKE RVEWEDKATR LRFLPSCKLV LCNR |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)