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AT3G07520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate receptor 1.4
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.
Computational
Description (TAIR10)
glutamate receptor 1.4 (GLR1.4); FUNCTIONS IN: intracellular ligand-gated ion channel activity, cation channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular cation homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: Glutamate receptor family protein (TAIR:AT5G48400.2); Has 3364 Blast hits to 3306 proteins in 339 species: Archae - 5; Bacteria - 450; Metazoa - 2203; Fungi - 0; Plants - 628; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
Protein Annotations
BioGrid:5275eggNOG:ENOG410ISR3eggNOG:ENOG410XPSHEMBL:AC009853
EMBL:AY072066EMBL:AY072067EMBL:CP002686EnsemblPlants:AT3G07520
EnsemblPlants:AT3G07520.1entrez:819940GeneID:819940Genevisible:Q8LGN1
GO:GO:0004970GO:GO:0005261GO:GO:0005262GO:GO:0005622
GO:GO:0005886GO:GO:0006816GO:GO:0008066GO:GO:0016021
GO:GO:0019722GO:GO:0030003GO:GO:0070588GO:GO:0071230
GO:GO:0098655Gramene:AT3G07520.1hmmpanther:PTHR18966hmmpanther:PTHR18966:SF204
HOGENOM:HOG000239558InParanoid:Q8LGN1InterPro:IPR001320InterPro:IPR001638
InterPro:IPR001828InterPro:IPR017103InterPro:IPR028082iPTMnet:Q8LGN1
KEGG:ath:AT3G07520KO:K05387MINT:MINT-8060398OMA:FVAHISE
PaxDb:Q8LGN1Pfam:PF00060Pfam:PF00497Pfam:PF01094
Pfam:Q8LGN1PhylomeDB:Q8LGN1PIRSF:PIRSF037090PRIDE:Q8LGN1
PRO:PR:Q8LGN1ProteinModelPortal:Q8LGN1Proteomes:UP000006548RefSeq:NP_187408.2
SMART:SM00079SMR:Q8LGN1STRING:3702.AT3G07520.1SUPFAM:SSF53822
SUPFAM:SSF53850TAIR:AT3G07520tair10-symbols:ATGLR1.4tair10-symbols:GLR1.4
TMHMM:TMhelixUniGene:At.40336UniProt:Q8LGN1
Coordinates (TAIR10) chr3:-:2395121..2398291
Molecular Weight (calculated) 97765.70 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.07
Length 861 amino acids
Sequence (TAIR10)
(BLAST)
001: MENCMIRNTG YFLTIFFLAF ISFAVTCSGT NQKDNVDRLP VVYEDVRIGL VVDMGSMEGK LVTTSISMAL SDFYHVNNGY RTRVSVLSRD SHGDPLQALA
101: AAMDLLQTEQ VEALVGGQSL LEAKNLAELG EKTKVPVISS FQVPSSLSLA KYNYFIQATH DTSSEAKGIA ALFSNFDWRT AVLIYEDDDD WRESIQPLVG
201: HFQQNAIHIE YKAEFSVSSN EECIMKQLRK FKASGIRIFV AHISERIANR LFPCARRLGM MEEGYAWILT ARSMNNFQDT NYLAKEEMEG VIGFKSYIPL
301: TEELHNFTLR WKRSLRLEEV VTRMSVCSIW AHDIAWSLAR AAEVAKLPGL SVYDLLEAIP ESAKHKGLSG DIKFIDKKFI SDKFEIVNMI GRGERSVGLW
401: NSGSFISNRR RRLSSTKALE TIIWPGGSTR IPKIRSLKEK RHGKKKKLRV LVPAGNITPQ ILEVKTDFKT GVTAATGYCI DVFETSILPF NYEVEYIPWP
501: GAINYKNYND LVYTLYSQKD KYDAAVGDIT ITDNRSLYVD FTLPFTDMGL AVVTAKDKSM WIIFKPLTLS LWLTIASFFI LTGAIVWLIE RHDNADFQGS
601: CFQQIGTLLC FGFSTLVFAH RERLQHNMSR FVVIVWIFAV LILTSNYTAT LTSVMTVQQI RGLKSNENIG FFSASIAANV VNDNPTFQGP RYKGLKTADD
701: FTNALRNGTI SFIVDEVPYV KLFVAKHPSE FVIVETESVT NGFGFAFQKG SPLVQKVSRE IEKLRRTEKL KAIENWWFQR QTTSATSEDT FHPLTVYTFR
801: GLFMITGVSF AFALIVYLIP WNREQRQVVL KHFHRYVSHR FAREIRPSPT TPNRQNENSV I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)