AT3G07520.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : glutamate receptor 1.4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
glutamate receptor 1.4 (GLR1.4); FUNCTIONS IN: intracellular ligand-gated ion channel activity, cation channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular cation homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: Glutamate receptor family protein (TAIR:AT5G48400.2); Has 3364 Blast hits to 3306 proteins in 339 species: Archae - 5; Bacteria - 450; Metazoa - 2203; Fungi - 0; Plants - 628; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:2395121..2398291 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 97765.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 861 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MENCMIRNTG YFLTIFFLAF ISFAVTCSGT NQKDNVDRLP VVYEDVRIGL VVDMGSMEGK LVTTSISMAL SDFYHVNNGY RTRVSVLSRD SHGDPLQALA 101: AAMDLLQTEQ VEALVGGQSL LEAKNLAELG EKTKVPVISS FQVPSSLSLA KYNYFIQATH DTSSEAKGIA ALFSNFDWRT AVLIYEDDDD WRESIQPLVG 201: HFQQNAIHIE YKAEFSVSSN EECIMKQLRK FKASGIRIFV AHISERIANR LFPCARRLGM MEEGYAWILT ARSMNNFQDT NYLAKEEMEG VIGFKSYIPL 301: TEELHNFTLR WKRSLRLEEV VTRMSVCSIW AHDIAWSLAR AAEVAKLPGL SVYDLLEAIP ESAKHKGLSG DIKFIDKKFI SDKFEIVNMI GRGERSVGLW 401: NSGSFISNRR RRLSSTKALE TIIWPGGSTR IPKIRSLKEK RHGKKKKLRV LVPAGNITPQ ILEVKTDFKT GVTAATGYCI DVFETSILPF NYEVEYIPWP 501: GAINYKNYND LVYTLYSQKD KYDAAVGDIT ITDNRSLYVD FTLPFTDMGL AVVTAKDKSM WIIFKPLTLS LWLTIASFFI LTGAIVWLIE RHDNADFQGS 601: CFQQIGTLLC FGFSTLVFAH RERLQHNMSR FVVIVWIFAV LILTSNYTAT LTSVMTVQQI RGLKSNENIG FFSASIAANV VNDNPTFQGP RYKGLKTADD 701: FTNALRNGTI SFIVDEVPYV KLFVAKHPSE FVIVETESVT NGFGFAFQKG SPLVQKVSRE IEKLRRTEKL KAIENWWFQR QTTSATSEDT FHPLTVYTFR 801: GLFMITGVSF AFALIVYLIP WNREQRQVVL KHFHRYVSHR FAREIRPSPT TPNRQNENSV I |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)