AT1G74170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.850 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 13 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 13 (RLP13); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27891555..27895441 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112058.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||
| Length | 1000 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVECNRKSG RITNIAFGIG FIIENPLLNL SLLHPFEDVR SLDLSSSRSC EDCGFSGLFD DVEGYKSLSR LRNLEILDLS SHRFNNSIFP FLNAATSLTT 101: LFLTYNNMHS PFLVKEFKDL TNLEHLDLRG NRFNGSIPTQ DYNSLRRFRK LEILDLSDNL FNSRIFPFLN SATSLKSLSL WGNNMGGPFP AKELRDLTNV 201: ELLDLSRNRF NGSIPVRALF ALRKLKALDL SDNEFSSSVE LQGKFAKTKP LSGTCPWKNM EELKLSNNKL AGQFPLCLTS LTGLRVLDLS SNQLTGNVPS 301: ALANLESLEY LSLFGNNFEG FFSLGLLANL SKLKVLRLDS QSNSLEVEFE TSWKPKFQLV VIALRSCNLE KVPHFLLHQK DLHHVDLSDN QIHGNFPSWL 401: LENNTKLEVL LLQNNSFTSF QLPKSAHNLL FLNVSVNKFN HLFLQNFGWI LPHLVCVNLA YNGFQGNLPS SLDNMKSIEF LDLSHNRFHG KLPRRFLKGC 501: YNLTILKLSH NKLSGEVFPE AANFTRLWVM SMDNNLFTGN IGKGFRSLPS LNVLDISNNK LTGVIPSWIG ERQGLFALQL SNNMLEGEIP TSLFNISYLQ 601: LLDLSSNRLS GDIPPHVSSI YHGAVLLLQN NNLSGVIPDT LLLNVIVLDL RNNRLSGNLP EFINTQNISI LLLRGNNFTG QIPHQFCSLS NIQLLDLSNN 701: KFNGSIPSCL SNTSFGLRKG DDSYRYDVPS RFGTAKDPVY FESLLMIDEF NMVNETNSQT KIEFATKHRY DAYMGGNLKL LFGMDLSENE LSGEIPVELG 801: GLVELEALNL SHNNLSGVIL ESFSGLKNVE SLDLSFNRLQ GPIPLQLTDM ISLAVFNVSY NNLSGIVPQG RQFNTFETQS YFGNPLLCGK SIDISCASNN 901: FHPTDNGVEA DESTVDMESF YWSFVAAYVT ILLGILASLS FDSPWSRAWF YIVDAFVLKV RNMLWQNTAG TKCSYVLVSL SSPSVVVLLK PPALFHKTRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)