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AT1G53350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.882
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (CC-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 15992 Blast hits to 14913 proteins in 520 species: Archae - 9; Bacteria - 880; Metazoa - 731; Fungi - 25; Plants - 14197; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
BioGrid:26996eggNOG:COG4886eggNOG:KOG4658EMBL:AC008007
EMBL:AF039382EMBL:AY206293EMBL:CP002684EMBL:DQ526763
EMBL:DQ526766EMBL:DQ526769EMBL:DQ526770EMBL:DQ526787
EMBL:DQ526802EMBL:DQ526803EMBL:DQ526813EMBL:DQ526821
EMBL:DQ526824EMBL:DQ526825EMBL:DQ526841EMBL:DQ526844
EMBL:DQ526845EnsemblPlants:AT1G53350EnsemblPlants:AT1G53350.1entrez:841771
ExpressionAtlas:P0C8S1ExpressionAtlas:Q19I61ExpressionAtlas:Q19I67ExpressionAtlas:Q19I76
ExpressionAtlas:Q6XW88Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:841771
Genevisible:P0C8S1GO:GO:0005524GO:GO:0006952GO:GO:0043531
Gramene:AT1G53350.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF549HOGENOM:HOG000237753
InParanoid:P0C8S1InterPro:IPR002182InterPro:IPR027417InterPro:IPR032675
iPTMnet:P0C8S1KEGG:ath:AT1G53350ncoils:CoilPaxDb:P0C8S1
PaxDb:Q19I63PaxDb:Q19I76PaxDb:Q19I77PaxDb:Q19I84
PaxDb:Q19IB7PaxDb:Q6XW89Pfam:P0C8S1Pfam:PF00931
PhylomeDB:P0C8S1PIR:F96573PRIDE:P0C8S1PRIDE:Q19I67
PRIDE:Q19I86PRIDE:Q19I94PRIDE:Q19IC5PRO:PR:P0C8S1
ProteinModelPortal:P0C8S1ProteinModelPortal:Q6XW90Proteomes:UP000006548RefSeq:NP_175742.4
SMR:P0C8S1STRING:3702.AT1G53350.1SUPFAM:SSF52058SUPFAM:SSF52540
TAIR:AT1G53350UniGene:At.37420UniProt:P0C8S1UniProt:Q19I54
UniProt:Q19I55UniProt:Q19I58UniProt:Q19I61UniProt:Q19I62
UniProt:Q19I63UniProt:Q19I67UniProt:Q19I68UniProt:Q19I76
UniProt:Q19I77UniProt:Q19I84UniProt:Q19I86UniProt:Q19I89
UniProt:Q19I94UniProt:Q19IA7UniProt:Q19IB7UniProt:Q19IC5
UniProt:Q19IC6UniProt:Q6XW86UniProt:Q6XW88UniProt:Q6XW89
UniProt:Q6XW90UniProt:Q6XW92UniProt:Q6XW93
Coordinates (TAIR10) chr1:+:19903899..19907515
Molecular Weight (calculated) 106493.00 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.23
Length 927 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEAVVSFGV EKLWELLSRE SARLNGIDEQ VDGLKRQLGR LQSLLKDADA KKNETERVRN FLEDVKDIVY DADDIIESFL LNELRGKEKG IKKQVRTLAC
101: FLVDRRKFAS DIEGITKRIS EVIVGMQSLG IQHIADGGGR SLSLQERQRE IRQTFSRNSE SDLVGLDQSV EELVDHLVEN DSVQVVSVSG MGGIGKTTLA
201: RQVFHHDIVR RHFDGFSWVC VSQQFTRKDV WQRILQDLRP YDEGIIQMDE YTLQGELFEL LESGRYLLVL DDVWKEEDWD RIKAVFPHKR GWKMLLTSRN
301: EGLGLHADPT CFAFRPRILT PEQSWKLFER IVSSRRDKTE FKVDEAMGKE MVTYCGGLPL AVKVLGGLLA KKHTVLEWKR VHSNIVTHIV GKSGLSDDNS
401: NSVYRVLSLS YEDLPMQLKH CFFYLAHFPE DYKIDVKILF NYWVAEGIIT PFHDGSTIQD TGESYLEELV RRNMVVVEES YLTSRIEYCQ MHDMMREVCL
501: SKAKEENFIR VVKVPTTTST TINAQSPCRS RRLVLHSGNA LHMLGHKDNK KARSVLIFGV EEKFWKPRGF QCLPLLRVLD LSYVQFEGGK LPSSIGDLIH
601: LRFLSLYEAG VSHLPSSLGN LKLLLCLNLG VADRLLVHVP NVLKEMQELR YLRLPRSMPA KTKLELGDLV NLESLTNFST KHGSVTDLLR MTKLSVLNVI
701: FSGECTFETL LLSLRELRNL ETLSFHDFQK VSVANHGGEL LVLDFIHLKD LTLSMHLPRF PDQYRFPPHL AHIWLIGCRM EEDPMPILEK LLHLKSVYLS
801: SGAFLGRRMV CSKGGFPQLL ALKMSYKKEL VEWRVEEGSM PCLRTLTIDN CKKLKQLPDG LKYVTCLKEL KIERMKREWT ERLKDTDGLK HICLEKSRGA
901: FLRRSIDDII FELGKRIVRH NPSISSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)