AT3G25010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 41 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 41 (RLP41); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 100338 Blast hits to 28106 proteins in 1068 species: Archae - 55; Bacteria - 6779; Metazoa - 21043; Fungi - 1251; Plants - 63659; Viruses - 32; Other Eukaryotes - 7519 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9110103..9112748 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96923.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||
| Length | 881 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSELLLRLNF LLLLLLSCVS PSSFVTFNNP VVGLGACGPH QIQAFTQFKN EFNTRACNHS SPWNGVWCDN STGAVTKIQF MACLSGTLKS NSSLFQFHEL 101: RSLLLIHNNF TSSSISSKFG MLNKLEVLFL SSSGFLGQVP FSFSNLSMLS ALDLSDNELT GSLSFVRNLR KLRVLDVSYN HFSGILNPNS SLFELHHLTY 201: LSLGSNSFTS STLPYEFGNL NKLELLDVSS NSFFGQVPPT ISNLTQLTEL YLPLNDFTGS LPLVQNLTKL SILALFGNHF SGTIPSSLFT MPFLSYLSLK 301: GNNLNGSIEV PNSSSSSRLE SLYLGKNHFE GKILKPISKL INLKELDLSF LSTSYPIDLS LFSSFKSLLV LDLTGDWISQ AGLSSDSYIS LTLEALYMKQ 401: CNISDFPNIL KSLPNLECID VSNNRVSGKI PEWLWSLPRL SSVFIGDNLL TGFEGSSEIL VNSSVQILVL DSNSLEGALP HLPLSIIYFS ARYNRFKGDI 501: PLSICNRSSL DVLDLRYNNF TGPIPPCLSN LLFLNLRKNN LEGSIPDTYF ADAPLRSLDV GYNRLTGKLP RSLLNCSALQ FLSVDHNGIE DTFPFYLKVL 601: PKLQVLLLSS NKFYGPLSPP NQGSLGFPEL RILEIAGNKL TGSLPQDFFV NWKASSLTMN EDQGLYMVYS KVVYGIYYLS YLATIDLQYK GLSMEQKWVL 701: TSSATIDLSG NRLEGEIPES IGLLKALIAL NLSNNAFTGH IPLSLANLVK IESLDLSSNQ LSGTIPNGLG TLSFLAYVNV SHNQLNGEIP QGTQITGQPK 801: SSFEGNAGLC GLPLQQRCFG TNAPPAHQFK EEEDEEQEQV LNWEGVAIGY GVGVLLGLAI AQLIASYKPE WLACLIKSRN R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)