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AT3G25020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 42
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 42 (RLP42); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 101819 Blast hits to 28851 proteins in 1081 species: Archae - 42; Bacteria - 7146; Metazoa - 22681; Fungi - 1243; Plants - 63183; Viruses - 32; Other Eukaryotes - 7492 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AP000412EMBL:CP002686
EnsemblPlants:AT3G25020EnsemblPlants:AT3G25020.1entrez:822093Gene3D:3.80.10.10
GeneID:822093Gramene:AT3G25020.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF37
HOGENOM:HOG000116562InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675
KEGG:ath:AT3G25020OMA:ITAICELPfam:PF00560Pfam:PF13855
Pfscan:PS51257PhylomeDB:Q9LJS0Proteomes:UP000006548RefSeq:NP_189138.1
SMART:SM00369SMR:Q9LJS0STRING:3702.AT3G25020.1SUPFAM:SSF52058
TAIR:AT3G25020tair10-symbols:AtRLP42tair10-symbols:RLP42UniGene:At.65152
UniProt:Q9LJS0
Coordinates (TAIR10) chr3:-:9116868..9119540
Molecular Weight (calculated) 98444.90 Da
IEP (calculated) 6.15
GRAVY (calculated) 0.00
Length 890 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKSLLRLTF LLLLLLSCVS PSSFFTFNNP AEGPGACGPH QIQAFTQFKN EFDTRACNHS DPWNGVWCDN STGAVTMLQL RACLSGTLKP NSSLFQFHHL
101: RSLLLPHNNF TSSSISSKFG MLNNLEVLSL SSSGFLAQVP FSFSNLSMLS ALDLSKNELT GSLSFVRNLR KLRVLDVSYN HFSGILNPNS SLFELHHLIY
201: LNLRYNNFTS SSLPYEFGNL NKLEVLDVSS NSFFGQVPPT ISNLTQLTEL YLPLNDFTGS LPLVQNLTKL SILHLFGNHF SGTIPSSLFT MPFLSSIYLN
301: KNNLSGSIEV PNSSSSSRLE HLYLGKNHLG KILEPIAKLV NLKELDLSFL NTSHPIDLSL FSSLKSLLLL DLSGDWISKA SLTLDSYIPS TLEVLRLEHC
401: DISEFPNVFK TLHNLEYIAL SNNRISGKFP EWLWSLPRLS SVFITDNLLT GFEGSSEVLV NSSVQILSLD TNSLEGALPH LPLSINYFSA IDNRFGGDIP
501: LSICNRSSLD VLDLSYNNFS GQIPPCLSNL LYLKLRKNNL EGSIPDKYYV DTPLRSFDVG YNRLTGKLPR SLINCSALQF LSVDHNGIKD TFPFYLKALP
601: KLQVLLLSSN EFYGPLSPPN QGPLGFPELR ILEIAGNKLT GSLPPDFFVN WKASSHTMNE DLGLYMVYSK VIFGNYHLTY YETIDLRYKG LSMEQENVLT
701: SSATIDLSGN RLEGEIPESL GLLKALIALN LSNNAFTGHI PLSLANLKKI ESLDLSSNQL SGTIPNGLGT LSFLAYMNVS HNQLNGEIPQ GTQITGQPKS
801: SFEGNAGLCG FPLQESCFGT NAPPAQKPKE EEEAEEDEQE LNWKAVAIGY GVGVLLGLAI AQLIASYKPE WLVCLVKSRN PLRSFFGFEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)