AT5G60900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor-like protein kinase 1 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a receptor-like protein kinase. | ||||||||||||
| Computational Description (TAIR10) |
receptor-like protein kinase 1 (RLK1); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G34300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24498467..24501494 | ||||||||||||
| Molecular Weight (calculated) | 84527.40 Da | ||||||||||||
| IEP (calculated) | 4.68 | ||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||
| Length | 748 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSLSCSIIH LVLILQLQTF FVFSQNIRNG SVPVGESLTA SESQQISSSW RSPSGDFAFG FRKIQPNDGF TLSIWFDKIS DKTIVWHAQA VNTTTGLVPN 101: GSKVTLTADG GLVIADPRGQ ELWRALSGGS VSRGRFTDDG NFVLFRDGSE DSDEVLWSSF ENPTDTLLPN QNIEVGRNLS SRRTETSFKK GRFSLRLEDD 201: GNLQLHSLNA ETASESDIYS QYYESNTNDP NNPGIQLVFN QSGEIYVLQR NNSRFVVKDR DPDFSIAAPF YISTGPDDAL GNMACGYNNI CSLGNNKRPK 301: CECPERFVLK DPSNEYGDCL PDFEMQTCRP ENQTANSDVN LYEFITLEKT NWPFGDYESY ANYDEERCKA SCLSDCLCAA VIFGTNRDLK CWKKKFPLSH 401: GERSPRGDSD TFIKVRNRSI ADVPVTGNRA KKLDWVFTYG ELAEATRDFT EELGRGAFGI VYKGYLEVAG GSEVTVAVKK LDRLDLDNEK EFKNEVKVIG 501: QIHHKNLVRL IGFCNEGQSQ MIVYEFLPQG TLANFLFRRP RPSWEDRKNI AVAIARGILY LHEECSEQII HCDIKPQNIL LDEYYTPRIS DFGLAKLLLM 601: NQTYTLTNIR GTKGYVAPEW FRNSPITSKV DVYSYGVMLL EIVCCKKAVD LEDNVILINW AYDCFRQGRL EDLTEDDSEA MNDMETVERY VKIAIWCIQE 701: EHGMRPNMRN VTQMLEGVIQ VFDPPNPSPY STFTWSDESL SSDPVSLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)