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AT3G61280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis thaliana protein of unknown function (DUF821)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61290.1); Has 683 Blast hits to 672 proteins in 134 species: Archae - 0; Bacteria - 47; Metazoa - 230; Fungi - 121; Plants - 246; Viruses - 5; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
CAZy:GT90eggNOG:ENOG410XT5UeggNOG:KOG2458EMBL:AK229790
EMBL:AY800630EMBL:AY954856EMBL:CP002686EMBL:KJ138780
EnsemblPlants:AT3G61280EnsemblPlants:AT3G61280.1entrez:825300ExpressionAtlas:Q5Q0C1
GeneID:825300GO:GO:0016021GO:GO:0016740Gramene:AT3G61280.1
hmmpanther:PTHR12203hmmpanther:PTHR12203:SF28HOGENOM:HOG000240927InterPro:IPR006598
ncoils:CoilOMA:GMCMAKEPfam:PF05686PhylomeDB:Q5Q0C1
Proteomes:UP000006548RefSeq:NP_191687.2SMART:SM00672STRING:3702.AT3G61280.1
TAIR:AT3G61280TMHMM:TMhelixUniGene:At.51230UniProt:Q5Q0C1
Coordinates (TAIR10) chr3:+:22681145..22683589
Molecular Weight (calculated) 63161.00 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.54
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MRENTQVAQF TEDHHQRHQT PITCLSSKLA KIWTLFTTKI FIFVLFIILL SASVSWMYAF VLGENKFQVT SIFTRNTKKS TPTKTTTTTD IPKIAIKIPL
101: NCTSLNSNTT QTCPSNYPTK FEPAISSSET CPDYFKWIHR DLKVWQKTGI TRETLERARP NAHFRIVIKS GRLYVHQYEK AFQTRDVFTI WGILQLLRMY
201: PGQIPDLELL FLCHDRPAIW KRDLKKKRKD TWPPPPLFHY CGHRDAYDIV FPDWSFWGWP ELNIKEWNKL SVALKEGNKK VKWEDRVPYA YWKGNPHVSP
301: IRGDLMRCNF SDKYDPMVRL YVQDWRSEIE AGFRGSNLED QCTHRYKIYI EGNAWSVSEK YILSCDSMTL LVKPEYYDFF FRSMVPMKHF WPIRQNNKCG
401: DLKFAVEWGN NNTEKAQIIG RQGSEYMMKN LKMKYVYDYM LYVLQGYGKL MKLDVTVPEN ATEVCSETMA CSITDGGRIR QCMDDSLVMS PSVKAACDLP
501: PSYGDYELKK FRKKQESAER KVEQWTNKYW NLRDPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)