AT5G54610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ankyrin | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ankyrin (ANK); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G54620.1); Has 16763 Blast hits to 8871 proteins in 442 species: Archae - 14; Bacteria - 1401; Metazoa - 8955; Fungi - 670; Plants - 1865; Viruses - 65; Other Eukaryotes - 3793 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22184781..22186481 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48348.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSKLLLVTQ SGSVDDLYSL IQAAPDILQK VDVLPIIHTP LHEASSAGKL DLAMELMILK PSFAKKLNEY GLSPLHLAVE NDQVELALEL VKVDPSLVRI 101: RGRGGMTPLH LVAKKGDVDL LTDFLLACPE SIKDVNVNGE TILHITIMND KYEQLKVLTG WMQKMRDSDD VFIDVLNRRD RGGNTVLHLA AYENNDKVVK 201: QLVKCLSLDR NIQNKSGMTA LDVLRARGSH MNKEIEEIIQ MSGGKTGGSL SGIQEWYIFL REPVTFKEHC KTRIARYRSR ISDGSRNALL VIAALIISAT 301: FQTAAQLLDK EKLDKVKKNG MRFSEFQLWG CNTVAFSIAI LFSFILLPVG RAYEWWYFII TVPLVFSYFL LMYMMHGLSF FFLIIYEGGL FLVYLLVLYV 401: KWKRCTQMKV RKPKSDLISD NFKNMV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)