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AT3G22231.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:15308754 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pathogen and circadian controlled 1
Curator
Summary (TAIR10)
Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.
Computational
Description (TAIR10)
PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fungus, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 49 Blast hits to 49 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:7120eggNOG:ENOG410J54JeggNOG:ENOG410ZBZ5EMBL:AK316896
EMBL:AK317758EMBL:AP001306EMBL:AY037207EMBL:BT002668
EMBL:CP002686EnsemblPlants:AT3G22231EnsemblPlants:AT3G22231.1entrez:821788
GeneID:821788Genevisible:Q94C26GO:GO:0005886GO:GO:0006629
GO:GO:0006952GO:GO:0007623GO:GO:0009617GO:GO:0009737
GO:GO:0009738GO:GO:0009863GO:GO:0010513GO:GO:0016020
GO:GO:0016021GO:GO:0046890GO:GO:0055088GO:GO:0071494
GO:GO:1900150GO:GO:1902290GO:GO:2000028Gramene:AT3G22231.1
hmmpanther:PTHR31568hmmpanther:PTHR31568:SF16HOGENOM:HOG000015205InParanoid:Q94C26
InterPro:IPR028144iPTMnet:Q94C26KEGG:ath:AT3G22231OMA:MECIFCC
PaxDb:Q94C26Pfam:PF12734Pfam:Q94C26PhylomeDB:Q94C26
PRIDE:Q94C26PRO:PR:Q94C26Proteomes:UP000006548RefSeq:NP_566702.1
STRING:3702.AT3G22231.1TAIR:AT3G22231tair10-symbols:PCC1UniGene:At.23480
UniGene:At.70054UniProt:Q94C26
Coordinates (TAIR10) chr3:-:7846080..7846563
Molecular Weight (calculated) 8478.91 Da
IEP (calculated) 3.99
GRAVY (calculated) -0.13
Length 81 amino acids
Sequence (TAIR10)
(BLAST)
1: MNQSAQNYFS VQKPSETSSG PYTSPPPIGY PTRDAVVGDP PAAAVETNSK GVNPEAIMSC FSTCMECIFC CGVCSSLCTS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)