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AT2G40750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 54
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group III
Computational
Description (TAIR10)
WRKY DNA-binding protein 54 (WRKY54); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 70 (TAIR:AT3G56400.1); Has 3183 Blast hits to 2752 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3171; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioGrid:4008eggNOG:ENOG410JT8JeggNOG:ENOG4110835EMBL:AF426253
EMBL:CP002685EnsemblPlants:AT2G40750EnsemblPlants:AT2G40750.1entrez:818670
Gene3D:2.20.25.80GeneID:818670Genevisible:Q93WU8GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009751GO:GO:0031347
GO:GO:0043565GO:GO:1900056Gramene:AT2G40750.1HOGENOM:HOG000146339
InParanoid:Q93WU8InterPro:IPR003657iPTMnet:Q93WU8KEGG:ath:AT2G40750
OMA:GKRGCYTPaxDb:Q93WU8Pfam:PF03106Pfam:Q93WU8
Pfscan:PS50811PRIDE:Q93WU8PRO:PR:Q93WU8PROSITE:PS50811
ProteinModelPortal:Q93WU8Proteomes:UP000006548RefSeq:NP_181607.1SMART:SM00774
SMR:Q93WU8STRING:3702.AT2G40750.1SUPFAM:0050605SUPFAM:SSF118290
TAIR:AT2G40750tair10-symbols:ATWRKY54tair10-symbols:WRKY54UniGene:At.26596
UniProt:Q93WU8
Coordinates (TAIR10) chr2:-:17000636..17002354
Molecular Weight (calculated) 38647.30 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.82
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSNSNNTKS IKRKVVDQLV EGYEFATQLQ LLLSHQHSNQ YHIDETRLVS GSGSVSGGPD PVDELMSKIL GSFHKTISVL DSFDPVAVSV PIAVEGSWNA
101: SCGDDSATPV SCNGGDSGES KKKRLGVGKG KRGCYTRKTR SHTRIVEAKS SEDRYAWRKY GQKEILNTTF PRSYFRCTHK PTQGCKATKQ VQKQDQDSEM
201: FQITYIGYHT CTANDQTHAK TEPFDQEIIM DSEKTLAAST AQNHVNAMVQ EQENNTSSVT AIDAGMVKEE QNNNGDQSKD YYEGSSTGED LSLVWQETMM
301: FDDHQNHYYC GETSTTSHQF GFIDNDDQFS SFFDSYCADY ERTSAM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)