AT2G33350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCT motif family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT1G04500.1); Has 8037 Blast hits to 5335 proteins in 176 species: Archae - 8; Bacteria - 26; Metazoa - 23; Fungi - 132; Plants - 1672; Viruses - 0; Other Eukaryotes - 6176 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14134116..14136836 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 45485.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.39 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||
| Length | 410 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLQDMISSHS HDQLSIDDIT SPLSAQIFDF CDPQLFQETF NQSSEVTSTS NILEKSGSFH SNTNTTTTTE NSNNNNNNKN TNLQDDEDDN NNTDLSIIFD 101: SQEDFENDIT ASIDFSSSSL QYPVIDHLLT AISQDQFDFS SGLQVIHQPP NISYSGDPLS LSAISSLAPP PLQSGVFEED CLSSVPSYNL GLNPSCSFFR 201: SSGLPAYMST GLLSAESNLG YLPGNIHVGS EINKPHDPLM DFQADNGGFF CPDSIKRMFN PEDLQKALGG GAENQSHLVT PQAHPALGPV DINGLEDSTL 301: NKVGKLSPEQ RKEKIRRYMK KRNERNFNKK IKYACRKTLA DSRPRVRGRF AKNDEFGEPN RQAFSSHHDD EDEDDMGVKD EEQLVDSSDI FAHISGANSF 401: KCNYPIQSWI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)