AT3G17609.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HY5-homolog | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a homolog of HY5 (HYH). Involved in phyB signaling pathway. | ||||||||||||
| Computational Description (TAIR10) |
HY5-homolog (HYH); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT5G11260.1); Has 1693 Blast hits to 1693 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 863; Fungi - 250; Plants - 465; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6023971..6024585 | ||||||||||||
| Molecular Weight (calculated) | 15251.70 Da | ||||||||||||
| IEP (calculated) | 10.74 | ||||||||||||
| GRAVY (calculated) | -1.29 | ||||||||||||
| Length | 135 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLQRPNGNS SSSSSHKKHK TAAGSTCVLS SSADDGVNNP ELDQTQNGVS TAKRRRGRNP VDKEYRSLKR LLRNRVSAQQ ARERKKVYVS DLESRANELQ 101: NNNDQLEEKI STLTNENTML RKMLINTRPK TDDNH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)