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AT4G39070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: response to karrikin, response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homolog2 (TAIR:AT1G75540.1); Has 1892 Blast hits to 1305 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1793; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
BioGrid:15342eggNOG:ENOG410JBVHeggNOG:ENOG410ZKKDEMBL:AK118879
EMBL:AL035679EMBL:AL161594EMBL:BT028893EMBL:CP002687
EnsemblPlants:AT4G39070EnsemblPlants:AT4G39070.1entrez:830062GeneID:830062
Genevisible:Q0IGM7GO:GO:0000989GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0009640
GO:GO:0009741GO:GO:0010200GO:GO:0080167GO:GO:1900458
GO:GO:2000306Gramene:AT4G39070.1hmmpanther:PTHR31832hmmpanther:PTHR31832:SF6
HOGENOM:HOG000239240InParanoid:Q0IGM7InterPro:IPR000315iPTMnet:Q0IGM7
KEGG:ath:AT4G39070OMA:HRADKLAPaxDb:Q0IGM7Pfam:PF00643
Pfam:Q0IGM7Pfscan:PS50119PhylomeDB:Q0IGM7PIR:T06067
PRIDE:Q0IGM7PRO:PR:Q0IGM7PROSITE:PS50119ProteinModelPortal:Q0IGM7
Proteomes:UP000006548RefSeq:NP_195618.2SMART:SM00336SMR:Q0IGM7
STRING:3702.AT4G39070.1TAIR:AT4G39070UniGene:At.31120UniProt:Q0IGM7
Coordinates (TAIR10) chr4:-:18205061..18206421
Molecular Weight (calculated) 26780.90 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.50
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)