suba logo
AT3G55120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 0.790
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chalcone-flavanone isomerase family protein
Curator
Summary (TAIR10)
Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.
Computational
Description (TAIR10)
TRANSPARENT TESTA 5 (TT5); FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: response to UV, response to UV-B, response to karrikin, response to sucrose stimulus, flavonoid biosynthetic process; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, extrinsic to endoplasmic reticulum membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.2); Has 391 Blast hits to 390 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 390; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55120-MONOMEREC:5.5.1.6eggNOG:ENOG410IJZHeggNOG:ENOG410YEUK
EMBL:AF439537EMBL:AJ287299EMBL:AJ287300EMBL:AJ287301
EMBL:AJ287302EMBL:AJ287303EMBL:AJ287304EMBL:AJ287305
EMBL:AJ287306EMBL:AJ287307EMBL:AJ287308EMBL:AJ287309
EMBL:AJ287310EMBL:AJ287311EMBL:AJ287312EMBL:AJ287313
EMBL:AJ287314EMBL:AJ287315EMBL:AJ287316EMBL:AJ287317
EMBL:AJ287318EMBL:AJ287319EMBL:AJ287320EMBL:AJ287321
EMBL:AJ418046EMBL:AJ492461EMBL:AJ492462EMBL:AJ492463
EMBL:AJ492464EMBL:AJ492465EMBL:AJ492466EMBL:AJ492467
EMBL:AJ492468EMBL:AJ492469EMBL:AJ492470EMBL:AJ492471
EMBL:AJ492472EMBL:AJ492473EMBL:AJ492474EMBL:AJ492475
EMBL:AJ492476EMBL:AJ492477EMBL:AJ492478EMBL:AJ492479
EMBL:AJ492480EMBL:AJ492481EMBL:AJ492482EMBL:AJ492483
EMBL:AJ492484EMBL:AJ492485EMBL:AJ492486EMBL:AJ492487
EMBL:AJ492488EMBL:AJ492489EMBL:AJ492490EMBL:AJ492491
EMBL:AJ492492EMBL:AJ492493EMBL:AJ492494EMBL:AJ492495
EMBL:AJ492496EMBL:AJ492497EMBL:AJ492498EMBL:AJ492499
EMBL:AJ492500EMBL:AJ492501EMBL:AJ492502EMBL:AJ492503
EMBL:AL132970EMBL:AY086088EMBL:BT004265EMBL:BT005528
EMBL:CP002686EMBL:M86358EnsemblPlants:AT3G55120EnsemblPlants:AT3G55120.1
entrez:824678Gene3D:3.50.70.10GeneID:824678Genevisible:P41088
GO:GO:0005634GO:GO:0005783GO:GO:0009411GO:GO:0009705
GO:GO:0009733GO:GO:0009813GO:GO:0010224GO:GO:0042406
GO:GO:0045430GO:GO:0080167Gramene:AT3G55120.1gramene_pathway:5.5.1.6
gramene_pathway:PWY1F-FLAVSYNgramene_plant_reactome:1119531gramene_plant_reactome:6875745hmmpanther:PTHR28039
hmmpanther:PTHR28039:SF8HOGENOM:HOG000006208InParanoid:P41088IntAct:P41088
InterPro:IPR016087InterPro:IPR016088KEGG:00941+5.5.1.6KEGG:ath:AT3G55120
KO:K01859OMA:ENCVAFWPaxDb:P41088PDB:4DOI
PDBsum:4DOIPfam:P41088Pfam:PF02431PhylomeDB:P41088
PIR:JQ1687PIR:T47651PRIDE:P41088PRO:PR:P41088
ProteinModelPortal:P41088Proteomes:UP000006548RefSeq:NP_191072.1SMR:P41088
STRING:3702.AT3G55120.1SUPFAM:0037263SUPFAM:SSF54626TAIR:AT3G55120
tair10-symbols:A11tair10-symbols:CFItair10-symbols:TT5UniGene:At.27425
UniPathway:UPA00154UniProt:P41088
Coordinates (TAIR10) chr3:-:20430248..20431415
Molecular Weight (calculated) 26597.00 Da
IEP (calculated) 5.19
GRAVY (calculated) 0.00
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)