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AT5G13930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chalcone and stilbene synthase family protein
Curator
Summary (TAIR10)
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
Computational
Description (TAIR10)
TRANSPARENT TESTA 4 (TT4); FUNCTIONS IN: naringenin-chalcone synthase activity; INVOLVED IN: in 11 processes; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Chalcone/stilbene synthase, active site (InterPro:IPR018088), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G34850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13930-MONOMERBioCyc:MetaCyc:AT5G13930-MONOMERBioGrid:16519BRENDA:2.3.1.74
EC:2.3.1.74eggNOG:COG3424eggNOG:ENOG410IKG2EMBL:AB005230
EMBL:AF112086EMBL:AY044331EMBL:AY054278EMBL:AY058155
EMBL:AY087778EMBL:AY090376EMBL:BT000596EMBL:CP002688
EMBL:M20308EMBL:S80554EMBL:Y18602EMBL:Y18603
EMBL:Z17649EMBL:Z17650EnsemblPlants:AT5G13930EnsemblPlants:AT5G13930.1
entrez:831241ExpressionAtlas:P13114Gene3D:3.40.47.10GeneID:831241
Genevisible:P13114GO:GO:0005634GO:GO:0005783GO:GO:0006979
GO:GO:0009611GO:GO:0009629GO:GO:0009705GO:GO:0009733
GO:GO:0009753GO:GO:0009813GO:GO:0009926GO:GO:0010224
GO:GO:0016210GO:GO:0031540gramene_pathway:2.3.1.74gramene_pathway:PWY1F-FLAVSYN
gramene_plant_reactome:1119513gramene_plant_reactome:1119531gramene_plant_reactome:1119630gramene_plant_reactome:6873616
gramene_plant_reactome:6874622gramene_plant_reactome:6875730gramene_plant_reactome:6876881hmmpanther:PTHR11877
hmmpanther:PTHR11877:SF27HOGENOM:HOG000245460InParanoid:P13114IntAct:P13114
InterPro:IPR001099InterPro:IPR011141InterPro:IPR012328InterPro:IPR016039
InterPro:IPR018088iPTMnet:P13114KEGG:00941+2.3.1.74KEGG:ath:AT5G13930
KO:K00660MINT:MINT-8184522OMA:NICEYMAPaxDb:P13114
Pfam:P13114Pfam:PF00195Pfam:PF02797PhylomeDB:P13114
PIR:A27721PIRSF:PIRSF000451PRIDE:P13114PRO:PR:P13114
PROSITE:PS00441ProteinModelPortal:P13114Proteomes:UP000006548RefSeq:NP_196897.1
scanprosite:PS00441SMR:P13114STRING:3702.AT5G13930.1SUPFAM:SSF53901
TAIR:AT5G13930tair10-symbols:ATCHStair10-symbols:CHStair10-symbols:TT4
UniGene:At.297UniGene:At.69414UniGene:At.71936UniPathway:UPA00154
UniProt:P13114UniProt:Q460R0
Coordinates (TAIR10) chr5:+:4488762..4490035
Molecular Weight (calculated) 43118.20 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.07
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)