AT5G48880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 ASURE: peroxisome What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : peroxisomal 3-keto-acyl-CoA thiolase 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1 (PKT1); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid oxidation; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active site (InterPro:IPR020610), Thiolase, N-terminal (InterPro:IPR020616), Thiolase, conserved site (InterPro:IPR020613), Thiolase, C-terminal (InterPro:IPR020617), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039), Thiolase, acyl-enzyme intermediate active site (InterPro:IPR020615); BEST Arabidopsis thaliana protein match is: peroxisomal 3-ketoacyl-CoA thiolase 4 (TAIR:AT1G04710.1); Has 22254 Blast hits to 22236 proteins in 2248 species: Archae - 414; Bacteria - 14009; Metazoa - 985; Fungi - 662; Plants - 288; Viruses - 0; Other Eukaryotes - 5896 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19814576..19816775 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43175.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAFGDDIVI VAAYRTAICK ARRGGFKDTL PDDLLASVLK AVVERTSLDP SEVGDIVVGT VIAPGSQRAM ECRVAAYFAG FPDSVPVRTV NRQCSSGLQA 101: VADVAASIRA GYYDIGIGAG VESMSTDHIP GGGFHGSNPR AQDFPKARDC LLPMGITSEN VAERFGVTRE EQDMAAVESH KRAAAAIASG KLKDEIIPVA 201: TKIVDPETKA EKAIVVSVDD GVRPNSNMAD LAKLKTVFKQ NGSTTAGNAS QISDGAGAVL LMKRSLAMKK GLPILGVFRS FAVTGVEPSV MGIGPAVAIP 301: AATKLAGLNV SDIDLFEINE AFASQYVYSC KKLELDMEKV NVNGGAIAIG HPLGATGARC VATLLHEMKR RGKDCRFGVI SMCIGTGMGA AAVFERGDSV 401: DNLSNARVAN GDSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)