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AT1G78570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rhamnose biosynthesis 1
Curator
Summary (TAIR10)
Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in <i>E. coli</i>.
Computational
Description (TAIR10)
rhamnose biosynthesis 1 (RHM1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); BEST Arabidopsis thaliana protein match is: rhamnose biosynthesis 3 (TAIR:AT3G14790.1); Has 54880 Blast hits to 54585 proteins in 3085 species: Archae - 917; Bacteria - 31981; Metazoa - 1168; Fungi - 566; Plants - 1527; Viruses - 106; Other Eukaryotes - 18615 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78570-MONOMERBioCyc:MetaCyc:AT1G78570-MONOMERBioGrid:29412EC:1.1.1.-
EC:4.2.1.76EC:5.1.3.-eggNOG:COG1088eggNOG:KOG0747
EMBL:AC007260EMBL:AY042833EMBL:AY081471EMBL:CP002684
EnsemblPlants:AT1G78570EnsemblPlants:AT1G78570.1entrez:844193Gene3D:3.40.50.720
GeneID:844193Genevisible:Q9SYM5GO:GO:0005829GO:GO:0008460
GO:GO:0009506GO:GO:0010253GO:GO:0010280GO:GO:0010315
GO:GO:0016491GO:GO:0016853GO:GO:0030154GO:GO:0042127
GO:GO:0050377GO:GO:0051555GO:GO:0071555Gramene:AT1G78570.1
gramene_pathway:4.2.1.76gramene_pathway:PWY-3261hmmpanther:PTHR10366hmmpanther:PTHR10366:SF385
HOGENOM:HOG000167988InParanoid:Q9SYM5IntAct:Q9SYM5InterPro:IPR005888
InterPro:IPR016040InterPro:IPR029903KEGG:00521+4.2.1.46KEGG:00523+4.2.1.46
KEGG:ath:AT1G78570KO:K12450OMA:YRDYINPPaxDb:Q9SYM5
Pfam:PF04321Pfam:PF16363Pfam:Q9SYM5PhylomeDB:Q9SYM5
PIR:C96814PRIDE:Q9SYM5PRO:PR:Q9SYM5ProteinModelPortal:Q9SYM5
Proteomes:UP000006548RefSeq:NP_177978.1SMR:Q9SYM5STRING:3702.AT1G78570.1
SUPFAM:SSF51735TAIR:AT1G78570tair10-symbols:ATRHM1tair10-symbols:RHM1
tair10-symbols:ROL1TIGRfam:TIGR01181TIGRFAMs:TIGR01181UniGene:At.198
UniGene:At.71030UniProt:Q9SYM5
Coordinates (TAIR10) chr1:+:29550110..29552207
Molecular Weight (calculated) 75376.00 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.42
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)