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AT1G63000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleotide-rhamnose synthase/epimerase-reductase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleotide-rhamnose synthase/epimerase-reductase (NRS/ER); FUNCTIONS IN: UDP-4-keto-rhamnose-4-keto-reductase activity, dTDP-4-dehydrorhamnose reductase activity, UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, UDP-rhamnose biosynthetic process; LOCATED IN: soluble fraction, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); BEST Arabidopsis thaliana protein match is: rhamnose biosynthesis 1 (TAIR:AT1G78570.1); Has 1363 Blast hits to 1363 proteins in 432 species: Archae - 58; Bacteria - 688; Metazoa - 9; Fungi - 22; Plants - 263; Viruses - 5; Other Eukaryotes - 318 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G63000-MONOMERBioCyc:MetaCyc:AT1G63000-MONOMERBioGrid:27824BRENDA:1.1.1.133
DNASU:842603EC:1.1.1.133EC:5.1.3.13eggNOG:COG1088
eggNOG:KOG0747EMBL:AC011000EMBL:AF332445EMBL:AF387005
EMBL:AY088123EMBL:AY513232EMBL:CP002684EnsemblPlants:AT1G63000
EnsemblPlants:AT1G63000.1entrez:842603Gene3D:3.40.50.720GeneID:842603
Genevisible:Q9LQ04GO:GO:0005829GO:GO:0005886GO:GO:0008830
GO:GO:0008831GO:GO:0009506GO:GO:0010253GO:GO:0010489
GO:GO:0010490GO:GO:0019305GO:GO:0048046GO:GO:0071555
Gramene:AT1G63000.1gramene_pathway:2.7.7.-gramene_pathway:PWY-3221gramene_pathway:PWY-3261
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF405HOGENOM:HOG000234446InParanoid:Q9LQ04
IntAct:Q9LQ04InterPro:IPR016040InterPro:IPR029903KEGG:ath:AT1G63000
KO:K12451OMA:CTVFATGPaxDb:Q9LQ04PDB:4QQR
PDBsum:4QQRPfam:PF04321Pfam:Q9LQ04PhylomeDB:Q9LQ04
PIR:B96655PRIDE:Q9LQ04PRO:PR:Q9LQ04ProMEX:Q9LQ04
ProteinModelPortal:Q9LQ04Proteomes:UP000006548RefSeq:NP_564806.1SMR:Q9LQ04
STRING:3702.AT1G63000.1SUPFAM:SSF51735TAIR:AT1G63000tair10-symbols:NRS/ER
tair10-symbols:UER1UniGene:At.70069UniGene:At.71603UniPathway:UPA00124
UniProt:Q9LQ04
Coordinates (TAIR10) chr1:+:23342510..23343859
Molecular Weight (calculated) 33599.20 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.23
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)