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AT5G39320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : UDP-glucose 6-dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13476 Blast hits to 13452 proteins in 2147 species: Archae - 313; Bacteria - 7039; Metazoa - 213; Fungi - 97; Plants - 213; Viruses - 14; Other Eukaryotes - 5587 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G39320-MONOMERBioGrid:19179BRENDA:1.1.1.22EC:1.1.1.22
eggNOG:COG1004eggNOG:KOG2666EMBL:AB009054EMBL:AB010694
EMBL:BT006380EMBL:CP002688EnsemblPlants:AT5G39320EnsemblPlants:AT5G39320.1
entrez:833928Gene3D:3.40.50.720GeneID:833928Genevisible:Q9FM01
GO:GO:0003979GO:GO:0005634GO:GO:0005829GO:GO:0005975
GO:GO:0006024GO:GO:0006065GO:GO:0048046GO:GO:0051287
Gramene:AT5G39320.1gramene_pathway:1.1.1.22gramene_pathway:PWY-3821gramene_pathway:PWY-4821
gramene_plant_reactome:1119563gramene_plant_reactome:6876153hmmpanther:PTHR11374hmmpanther:PTHR11374:SF28
HOGENOM:HOG000153773InParanoid:Q9FM01IntAct:Q9FM01InterPro:IPR001732
InterPro:IPR008927InterPro:IPR014026InterPro:IPR014027InterPro:IPR016040
InterPro:IPR017476InterPro:IPR028356iPTMnet:Q9FM01KEGG:00040+1.1.1.22
KEGG:00053+1.1.1.22KEGG:00500+1.1.1.22KEGG:00520+1.1.1.22KEGG:ath:AT5G39320
KO:K00012OMA:LEANCRPPANTHER:PTHR11374PaxDb:Q9FM01
Pfam:PF00984Pfam:PF03720Pfam:PF03721Pfam:Q9FM01
PhylomeDB:Q9FM01PIRSF:PIRSF000124PIRSF:PIRSF500133PRIDE:Q9FM01
PRO:PR:Q9FM01ProteinModelPortal:Q9FM01Proteomes:UP000006548Reactome:R-ATH-173599
RefSeq:NP_198748.1SMART:SM00984SMR:Q9FM01STRING:3702.AT5G39320.1
SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52413TAIR:AT5G39320
TIGRfam:TIGR03026TIGRFAMs:TIGR03026UniGene:At.20102UniGene:At.71506
UniPathway:UPA00038UniProt:Q9FM01
Coordinates (TAIR10) chr5:+:15743254..15744696
Molecular Weight (calculated) 53099.90 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.05
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPDIEVA VVDISVPRIN AWNSDQLPIY EPGLDDIVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTTGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LMHNSKGIKF QILSNPEFLA EGTAIADLFN PDRVLIGGRE TPEGFKAVQT LKEVYANWVP
201: EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEST GADVTQVSYA VGTDSRIGSK FLNASVGFGG SCFQKDILNL VYICQCNGLP EVAEYWKQVI
301: KINDYQKNRF VNRIVSSMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAQI SIYDPQVTEE QIQRDLSMKK FDWDHPLHLQ PMSPTTVKQV
401: SVTWDAYEAT KDAHAVCVLT EWDEFKSLDY QKIFDNMQKP AFIFDGRNIM NVNKLREIGF IVYSIGKPLD PWLKDMPAFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)