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AT5G10260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.520
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog H1E
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog H1E (RABH1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1D (TAIR:AT2G22290.1); Has 27017 Blast hits to 26988 proteins in 737 species: Archae - 21; Bacteria - 160; Metazoa - 14299; Fungi - 3762; Plants - 2966; Viruses - 20; Other Eukaryotes - 5789 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPBIeggNOG:KOG0094EMBL:AL360334EMBL:BT020541
EMBL:BT024829EMBL:CP002688EnsemblPlants:AT5G10260EnsemblPlants:AT5G10260.1
entrez:830890Gene3D:3.40.50.300GeneID:830890Genevisible:Q9LFT9
GO:GO:0000139GO:GO:0005525GO:GO:0005794GO:GO:0006890
GO:GO:0006891GO:GO:0007264GO:GO:0015031GO:GO:0042147
Gramene:AT5G10260.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF474HOGENOM:HOG000233968
InParanoid:Q9LFT9InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT5G10260KO:K07893OMA:SRQITTEPaxDb:Q9LFT9
Pfam:PF00071Pfam:Q9LFT9Pfscan:PS51419PhylomeDB:Q9LFT9
PIR:T50814PRIDE:Q9LFT9PRO:PR:Q9LFT9PROSITE:PS51419
ProteinModelPortal:Q9LFT9Proteomes:UP000006548RefSeq:NP_196588.3SMR:Q9LFT9
STRING:3702.AT5G10260.1SUPFAM:SSF52540TAIR:AT5G10260tair10-symbols:AtRABH1e
tair10-symbols:RABH1eTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.50443
UniProt:Q9LFT9
Coordinates (TAIR10) chr5:+:3219991..3221301
Molecular Weight (calculated) 23134.60 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.25
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)