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AT1G19940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase 9B5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase 9B5 (GH9B5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B7 (TAIR:AT1G75680.1); Has 1847 Blast hits to 1835 proteins in 264 species: Archae - 2; Bacteria - 685; Metazoa - 182; Fungi - 17; Plants - 919; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G19940-MONOMERCAZy:GH9EC:3.2.1.4eggNOG:ENOG410IDXW
eggNOG:ENOG410XPC9EMBL:AC007797EMBL:AC022472EMBL:AY048245
EMBL:AY113063EMBL:CP002684EnsemblPlants:AT1G19940EnsemblPlants:AT1G19940.1
entrez:838583Gene3D:1.50.10.10GeneID:838583Genevisible:Q9FXI9
GO:GO:0005576GO:GO:0008810GO:GO:0030245GO:GO:0071555
Gramene:AT1G19940.1gramene_pathway:3.2.1.4gramene_pathway:PWY-1001hmmpanther:PTHR22298
hmmpanther:PTHR22298:SF57HOGENOM:HOG000021033InParanoid:Q9FXI9InterPro:IPR001701
InterPro:IPR008928InterPro:IPR012341InterPro:IPR018221KEGG:00500+3.2.1.4
KEGG:ath:AT1G19940OMA:HPSENVFPaxDb:Q9FXI9Pfam:PF00759
Pfam:Q9FXI9PhylomeDB:Q9FXI9PIR:G86332PRIDE:Q9FXI9
PRO:PR:Q9FXI9PROSITE:PS00592ProteinModelPortal:Q9FXI9Proteomes:UP000006548
RefSeq:NP_173423.1scanprosite:PS00592SMR:Q9FXI9STRING:3702.AT1G19940.1
SUPFAM:SSF48208TAIR:AT1G19940tair10-symbols:AtGH9B5tair10-symbols:GH9B5
TMHMM:TMhelixUniGene:At.16213UniProt:Q9FXI9
Coordinates (TAIR10) chr1:-:6918323..6920268
Molecular Weight (calculated) 56710.60 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.27
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAKPRSRCC CCSVFIGVII LIAIIIAVIF TIRHRSNHSD DDGSNVKNYA NALKIAMQFF DIQKSGKLEN NEISWRGDSG LKDGSEASID LSKGLYDAGD
101: HMKFGFPMAF TATVLSWSIL EYGDQMASLN LLDHAKDSLK WTTDFLINAH PSPNVLYIQV GDPVTDHKCW DRPETMTRKR TLTKIDTKTP GTEVAAETAA
201: AMAAASLVFK ESDTKYSSTL LKHAKQLFDF ADNNRGSYSV NIPEVQSYYN STGYGDELLW AASWLYHATE DQTYLDFVSE NGEEFGNFGS PSWFSWDNKL
301: PGTHILLSRL TFFKKGLSGS KGLQGFKETA EAVMCGLIPS SPTATSSRTD GGLIWVSEWN ALQHPVSSAF LATLYSDYML TSGVKELSCS DQSFKPSDLR
401: KFARSQADYM LGKNPEKMSY LVGYGEKYPE FVHHRGASIP ADATTGCKDG FKWLNSDEPN PNVAYGALVG GPFLNDTFID ARNNSMQNEP STYNSALVVG
501: LLSSLVTTSS SVESF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)