AT1G19940.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : glycosyl hydrolase 9B5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
glycosyl hydrolase 9B5 (GH9B5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B7 (TAIR:AT1G75680.1); Has 1847 Blast hits to 1835 proteins in 264 species: Archae - 2; Bacteria - 685; Metazoa - 182; Fungi - 17; Plants - 919; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:6918323..6920268 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 56710.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 515 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVAKPRSRCC CCSVFIGVII LIAIIIAVIF TIRHRSNHSD DDGSNVKNYA NALKIAMQFF DIQKSGKLEN NEISWRGDSG LKDGSEASID LSKGLYDAGD 101: HMKFGFPMAF TATVLSWSIL EYGDQMASLN LLDHAKDSLK WTTDFLINAH PSPNVLYIQV GDPVTDHKCW DRPETMTRKR TLTKIDTKTP GTEVAAETAA 201: AMAAASLVFK ESDTKYSSTL LKHAKQLFDF ADNNRGSYSV NIPEVQSYYN STGYGDELLW AASWLYHATE DQTYLDFVSE NGEEFGNFGS PSWFSWDNKL 301: PGTHILLSRL TFFKKGLSGS KGLQGFKETA EAVMCGLIPS SPTATSSRTD GGLIWVSEWN ALQHPVSSAF LATLYSDYML TSGVKELSCS DQSFKPSDLR 401: KFARSQADYM LGKNPEKMSY LVGYGEKYPE FVHHRGASIP ADATTGCKDG FKWLNSDEPN PNVAYGALVG GPFLNDTFID ARNNSMQNEP STYNSALVVG 501: LLSSLVTTSS SVESF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)