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AT3G61830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin response factor 18 (ARF18); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:10670eggNOG:ENOG410IIQIeggNOG:ENOG410YECHEMBL:AF334717
EMBL:AK229945EMBL:AL132959EMBL:AY059746EMBL:AY070463
EMBL:AY091392EMBL:CP002686EnsemblPlants:AT3G61830EnsemblPlants:AT3G61830.1
entrez:825356Gene3D:2.40.330.10GeneID:825356Genevisible:Q9C5W9
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009734Gramene:AT3G61830.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF17
HOGENOM:HOG000241141InParanoid:Q9C5W9IntAct:Q9C5W9InterPro:IPR000270
InterPro:IPR003340InterPro:IPR010525InterPro:IPR015300InterPro:IPR033389
iPTMnet:Q9C5W9KEGG:ath:AT3G61830MINT:MINT-8065728OMA:CPRNKWE
PaxDb:Q9C5W9Pfam:PF02309Pfam:PF02362Pfam:PF06507
Pfam:Q9C5W9Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9C5W9
PIR:T47975PRIDE:Q9C5W9PRO:PR:Q9C5W9PROSITE:PS50863
PROSITE:PS51745ProteinModelPortal:Q9C5W9Proteomes:UP000006548RefSeq:NP_567119.1
SMART:SM01019SMR:Q9C5W9STRING:3702.AT3G61830.1SUPFAM:SSF101936
SUPFAM:SSF54277TAIR:AT3G61830tair10-symbols:ARF18UniGene:At.17167
UniGene:At.69165UniProt:Q9C5W9
Coordinates (TAIR10) chr3:+:22888171..22891179
Molecular Weight (calculated) 67666.00 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.50
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)