suba logo
AT2G35910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G06490.1); Has 8225 Blast hits to 8203 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 1997; Fungi - 507; Plants - 4688; Viruses - 66; Other Eukaryotes - 967 (source: NCBI BLink).
Protein Annotations
BioGrid:3508eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC007017
EMBL:AY090933EMBL:AY122973EMBL:CP002685EnsemblPlants:AT2G35910
EnsemblPlants:AT2G35910.1entrez:818164Gene3D:3.30.40.10GeneID:818164
Genevisible:Q8RX29GO:GO:0008270GO:GO:0016021GO:GO:0016567
Gramene:AT2G35910.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF126HOGENOM:HOG000237642
InParanoid:Q8RX29InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT2G35910
OMA:VEPPQRRPaxDb:Q8RX29Pfam:PF13639Pfam:Q8RX29
Pfscan:PS50089PhylomeDB:Q8RX29PIR:E84774PRIDE:Q8RX29
PRO:PR:Q8RX29PROSITE:PS50089ProteinModelPortal:Q8RX29Proteomes:UP000006548
RefSeq:NP_850254.1SMART:SM00184SMR:Q8RX29SUPFAM:SSF57850
TAIR:AT2G35910TMHMM:TMhelixUniGene:At.37613UniPathway:UPA00143
UniProt:Q8RX29
Coordinates (TAIR10) chr2:-:15073225..15073878
Molecular Weight (calculated) 23881.90 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.16
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MLQFTLSYIK SLTKNLSIIS PLPPPKPIKQ NHQTKPAMNN FQPPPPSEMP DYNGLLGTDD IGGFRYGIGV SIGVLLLITT ITLTSYYCTR NQLSSSPSQT
101: NQDSTRIHHH HHHVIIDVVP GLDEDTIQSY PKILYSEAKG PTTASCCAIC LGDYKGKHLL RQLPDCNHLF HLKCIDTWLR LNPTCPVCRT SPLPTPLSTP
201: LAEVVPLASS VAATRMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)