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AT2G35000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.704
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
E3 ligase-like protein induced by chitin oligomers.
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: defense response to fungus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G35330.1); Has 9249 Blast hits to 9225 proteins in 281 species: Archae - 0; Bacteria - 6; Metazoa - 2393; Fungi - 760; Plants - 4794; Viruses - 39; Other Eukaryotes - 1257 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC004238
EMBL:AK228813EMBL:BT015733EMBL:BT020192EMBL:CP002685
EMBL:DQ059110EnsemblPlants:AT2G35000EnsemblPlants:AT2G35000.1entrez:818064
Gene3D:3.30.40.10GeneID:818064Genevisible:O64763GO:GO:0004842
GO:GO:0008270GO:GO:0010200GO:GO:0016021GO:GO:0016567
GO:GO:0016874GO:GO:0050832Gramene:AT2G35000.1hmmpanther:PTHR14155
HOGENOM:HOG000239182InParanoid:O64763InterPro:IPR001841InterPro:IPR013083
iPTMnet:O64763KEGG:ath:AT2G35000KO:K10664OMA:KSILECA
PaxDb:O64763Pfam:O64763Pfam:PF13639Pfscan:PS50089
PhylomeDB:O64763PIR:T00481PRIDE:O64763PRO:PR:O64763
PROSITE:PS50089ProteinModelPortal:O64763Proteomes:UP000006548RefSeq:NP_181045.1
SMART:SM00184SMR:O64763STRING:3702.AT2G35000.1SUPFAM:SSF57850
TAIR:AT2G35000TMHMM:TMhelixUniGene:At.37726UniPathway:UPA00143
UniProt:O64763
Coordinates (TAIR10) chr2:-:14751809..14752945
Molecular Weight (calculated) 41882.60 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.27
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MAILDTKSSR WIPHNLLFLL LLLLLQSVPY GFGQTQTTPP GTTKTKPNDP VVVVITVLFL VIFFMVFGSI FCRRSNAQFS RSSIFRSTDA DAESQVVRIR
101: RLTARGLDAE AIETFPTFLY SEVKAVRIGK GGVECAVCLC EFEDDETLRL MPPCCHVFHA DCVDVWLSEH STCPLCRADL VLNQQGDDDD STESYSGTDP
201: GTISSSTDPE RGMVLESSDA HLLDAVTWSN SNITPRSKST GLSSWQITGI LFPRSHSTGH SLIQPAGNLD RFTLRLPDDV RRQLMKTSRT MGHVALLPQA
301: RSSRSGYRSG SVGSERSAFP YGRKSNNNNR RLHSLSFSFS FRSGSVRSTF SGDAPKNLPT SIEAGERSFE RLRPDERV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)