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AT5G47950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.816
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G30280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47950-MONOMEREMBL:AB024025EMBL:AK117831EMBL:BT005364
EMBL:CP002688EnsemblPlants:AT5G47950EnsemblPlants:AT5G47950.1entrez:834846
Gene3D:3.30.559.10GeneID:834846GO:GO:0016747Gramene:AT5G47950.1
hmmpanther:PTHR31623hmmpanther:PTHR31623:SF15HOGENOM:HOG000090321InterPro:IPR003480
InterPro:IPR023213KEGG:ath:AT5G47950ncoils:CoilOMA:QEQTSHT
Pfam:PF02458PhylomeDB:Q9FGV4Proteomes:UP000006548RefSeq:NP_199606.1
SMR:Q9FGV4TAIR:AT5G47950UniGene:At.7908UniProt:Q9FGV4
Coordinates (TAIR10) chr5:-:19417218..19418498
Molecular Weight (calculated) 46744.20 Da
IEP (calculated) 4.75
GRAVY (calculated) 0.04
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTMKVETIG KEIIKPSATT PTDLSTLQLS IMDILMPPVY AVAFLFYTKD DLISQEQTSH TLKTSLSEIL TKFHPLAGRV NGVTIKSTDE GAVFVEARVD
101: NCDLSGFLRS PDTESLKQLL PVDDEPAPTW PLLLVKATYF RCGGMAIGLC ISHRLADAAS LSIFLQAWAA TARGESDLVA SPDFCSTKLY PAANEAIKIP
201: GEVVNRTSVT KRFVFVASKI EELRNKVASD VVPRPTRVQS VTSLIWKCVV TASTDTIREK ALFQPANLRT KIPSLLSENQ IGNLLFNSLI LDGKAGMDIV
301: ETVKELQKRA EDLSGLVQDE EGSSMTIGWR LFGEIINSKF NREDHDMHSV TSWCKIPLYD ACFGWGSPVW VAGSVSPNLD YVTVLIDSKD GQGIEAWVTL
401: PQENMLLLEQ STELLAFASP NPSVLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)