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AT4G12550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-Induced in Root cultures 1
Curator
Summary (TAIR10)
isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.
Computational
Description (TAIR10)
Auxin-Induced in Root cultures 1 (AIR1); FUNCTIONS IN: lipid binding; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12545.1); Has 758 Blast hits to 752 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 758; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUCSeggNOG:ENOG41106ZZEMBL:AF098630EMBL:AF410287
EMBL:AL049730EMBL:AL161534EMBL:AY085981EMBL:AY093728
EMBL:CP002687EnsemblPlants:AT4G12550EnsemblPlants:AT4G12550.1entrez:826868
GeneID:826868Genevisible:Q9S7I2GO:GO:0005576GO:GO:0009733
GO:GO:0010102Gramene:AT4G12550.1hmmpanther:PTHR31731HOGENOM:HOG000237797
InParanoid:Q9S7I2InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT4G12550
OMA:CPKNSIEPaxDb:Q9S7I2Pfam:PF14547Pfam:Q9S7I2
PhylomeDB:Q9S7I2PIR:T07647PRO:PR:Q9S7I2ProteinModelPortal:Q9S7I2
Proteomes:UP000006548RefSeq:NP_192992.1SMART:SM00499SMR:Q9S7I2
STRING:3702.AT4G12550.1SUPFAM:SSF47699TAIR:AT4G12550tair10-symbols:AIR1
UniGene:At.29771UniGene:At.3231UniProt:Q9S7I2
Coordinates (TAIR10) chr4:+:7439176..7439511
Molecular Weight (calculated) 11624.50 Da
IEP (calculated) 7.96
GRAVY (calculated) 0.78
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPRTPLALF VSLNLLFFTY TSATTGTCPK NSIEIGTCVT VLNLVDLTLG NPPVKPCCSL IQGLADLEAA VCLCTAVKAS ILGIVNINLP INLSVLLNVC
101: SRNAPKSFQC A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)