AT3G29250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.858 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G29260.1); Has 117310 Blast hits to 117106 proteins in 3562 species: Archae - 953; Bacteria - 77625; Metazoa - 4727; Fungi - 6379; Plants - 2526; Viruses - 6; Other Eukaryotes - 25094 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11193767..11194948 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31804.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.13 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 298 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPKLLVIFNI IYPLQSLKKD TFNFWWSFQK WKYNKTMSGL RQVLDGKIAI ITGGASGIGA EAVRLFTDHG AKVVIVDIQE ELGQNLAVSI GLDKASFYRC 101: NVTDETDVEN AVKFTVEKHG KLDVLFSNAG VLEAFGSVLD LDLEAFDRTM AVNVRGAAAF IKHAARSMVA SGTRGSIVCT TSIAAEIGGP GPHSYTASKH 201: ALLGLIRSAC AGLGQYGIRV NGVAPYGVAT GMTSAYNEEA VKMLEEYGEA LGNLKGVVLK ARHIAEAALF LASDDSVYIS GQNLVVDGGF SVVKLMTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)