AT1G02360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chitinase family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, leaf whorl, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2043 Blast hits to 2034 proteins in 421 species: Archae - 0; Bacteria - 465; Metazoa - 37; Fungi - 5; Plants - 1453; Viruses - 2; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:472138..473116 | ||||||||||||
| Molecular Weight (calculated) | 30138.40 Da | ||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||
| Length | 272 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQQHSFLLL CFFLSISYLL SSAQTEATSI ERLVPRDLYN KIFIHKDNTA CPANGFYTYE SFVQATRRFP RFGSVGSPVT QRLEVAAFLA QISHETTGGW 101: ATAPDGPYAW GLCFKEEVSP QSTYCDSSDT QWPCFPNKTY QGRGPIQLSW NYNYGPAGRA LGFDGLRNPE TVSNNSVIAF QTALWFWMTP QSPKPSCHDV 201: MIGKYRPTAA DLAANRTGGF GLTTNIINGG LECGIPGDGR VNDRIGFFQR YTGLFKVATG PNLDCENQRP YA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)