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AT2G47140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G47130.1); Has 112960 Blast hits to 112749 proteins in 3532 species: Archae - 956; Bacteria - 74077; Metazoa - 4904; Fungi - 6164; Plants - 2566; Viruses - 5; Other Eukaryotes - 24288 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G47140-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725
EMBL:AC004411EMBL:AF370319EMBL:AY063106EMBL:CP002685
EnsemblPlants:AT2G47140EnsemblPlants:AT2G47140.1entrez:819327Gene3D:3.40.50.720
GeneID:819327Genevisible:Q94K41GO:GO:0016491Gramene:AT2G47140.1
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF498InterPro:IPR002347InterPro:IPR016040
KEGG:ath:AT2G47140OMA:IACEGAHPANTHER:PTHR24322PaxDb:Q94K41
Pfam:PF00106Pfam:Q94K41PhylomeDB:Q94K41PIR:T02174
PRIDE:Q94K41PRINTS:PR00080PRINTS:PR00081PRO:PR:Q94K41
ProteinModelPortal:Q94K41Proteomes:UP000006548Reactome:R-ATH-2142700Reactome:R-ATH-70895
RefSeq:NP_566097.1SMR:Q94K41STRING:3702.AT2G47140.1SUPFAM:SSF51735
TAIR:AT2G47140UniGene:At.12584UniProt:Q94K41
Coordinates (TAIR10) chr2:-:19350970..19352059
Molecular Weight (calculated) 26848.20 Da
IEP (calculated) 6.79
GRAVY (calculated) 0.17
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGKRLDGKI VIITGGASGI GAESVRLFTE HGARVVIVDV QDELGQNVAV SIGEDKASYY HCDVTNETEV ENAVKFTVEK YGKLDVLFSN AGVIEPFVSI
101: LDLNLNELDR TIAINLRGTA AFIKHAARAM VEKGIRGSIV CTTSVAAEIA GTAPHGYTTS KHGLLGLIKS ASGGLGKYGI RVNGVAPFGV ATPLVCNGFK
201: MEPNVVEQNT SASANLKGIV LKARHVAEAA LFLASDESAY VSGQNLAVDG GYSVVKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)