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AT4G01700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chitinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT1G02360.1); Has 2167 Blast hits to 2158 proteins in 471 species: Archae - 0; Bacteria - 548; Metazoa - 37; Fungi - 6; Plants - 1456; Viruses - 21; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G01700-MONOMERCAZy:GH19eggNOG:COG3979eggNOG:KOG4742
EMBL:AF104919EMBL:AK227597EMBL:AL161492EMBL:BT003069
EMBL:CP002687EnsemblPlants:AT4G01700EnsemblPlants:AT4G01700.1entrez:828131
GeneID:828131GO:GO:0004568GO:GO:0005618GO:GO:0005975
GO:GO:0006032GO:GO:0016998GO:GO:0050832Gramene:AT4G01700.1
hmmpanther:PTHR22595hmmpanther:PTHR22595:SF35HOGENOM:HOG000231411InterPro:IPR000726
InterPro:IPR016283InterPro:IPR023346KEGG:00520+3.2.1.14KEGG:ath:AT4G01700
OMA:PNDARVNPfam:PF00182PhylomeDB:Q9ZSI6PIR:T02004
PIRSF:PIRSF001060PROSITE:PS00774Proteomes:UP000006548RefSeq:NP_192079.1
scanprosite:PS00774SMR:Q9ZSI6STRING:3702.AT4G01700.1SUPFAM:SSF53955
TAIR:AT4G01700UniGene:At.19758UniGene:At.70176UniProt:Q9ZSI6
Coordinates (TAIR10) chr4:-:732413..733487
Molecular Weight (calculated) 31466.30 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.40
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKQISLLLC LLLFIFSISS SLHETEARKH NKYKPAPIMS LVPRTLYDQI FIHKDNNACP AKGFYPYEAF VEATRSFPKF GSVGNFWTRR REVAAFLAQI
101: SHETTGGWAT APDGPYAWGL CFKEEVSPQS NYCDASNKDW PCVSGKSYKG RGPIQLSWNY NYGQAGRALG FDGLQNPELV ANNSVLAFKT ALWFWMTEQT
201: PKPSCHNVMV NRYRPTKADR AANRTVGYGL VTNIINGGLE CGIPGDGRVT DRVGYFQRYA QLFKVTTGPN LDCENQRPFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)