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AT5G60950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COBRA-like protein 5 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
COBRA-like protein 5 precursor (COBL5); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (TAIR:AT5G60920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTK3eggNOG:ENOG41107S3EMBL:AB008269EMBL:BT010831
EMBL:BT011296EMBL:CP002688EnsemblPlants:AT5G60950EnsemblPlants:AT5G60950.1
entrez:836216GeneID:836216Genevisible:Q9FME5GO:GO:0010215
GO:GO:0016049GO:GO:0031225GO:GO:0050832Gramene:AT5G60950.1
hmmpanther:PTHR31673HOGENOM:HOG000240147InParanoid:Q9FME5InterPro:IPR006918
KEGG:ath:AT5G60950OMA:SMFKGNIPaxDb:Q9FME5Pfam:PF04833
Pfam:Q9FME5PhylomeDB:Q9FME5PRIDE:Q9FME5PRO:PR:Q9FME5
ProDom:PD140986ProteinModelPortal:Q9FME5Proteomes:UP000006548RefSeq:NP_200903.1
STRING:3702.AT5G60950.1TAIR:AT5G60950tair10-symbols:COBL5UniGene:At.20668
UniProt:Q9FME5
Coordinates (TAIR10) chr5:-:24527157..24528005
Molecular Weight (calculated) 22481.40 Da
IEP (calculated) 10.34
GRAVY (calculated) -0.09
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLFSTMIV LLLVSFSCLI STEALTSNYG NITVKWDLLN WTPDGYVAVV TAYNYQKQRS IPGWKMSWRG TKKEVIWNML GAKTTGQGGC SMFKGNIPQS
101: CVRKPTVVDL LPGTPFNQQI ANCCKSGVLK PGSESAFQLS VGSAGNSVKT ARMPANFMFT APKQQYICGP SKNVRPTRFT TADKRRITAA LMTWNITCVF
201: HKAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)