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AT1G53920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-motif lipase 5
Curator
Summary (TAIR10)
Contains lipase signature motif and GDSL domain.
Computational
Description (TAIR10)
GDSL-motif lipase 5 (GLIP5); FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL lipase 1 (TAIR:AT5G40990.1); Has 3342 Blast hits to 3298 proteins in 168 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 23; Plants - 3083; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53920-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IHW2
EMBL:AC009324EMBL:CP002684EnsemblPlants:AT1G53920EnsemblPlants:AT1G53920.1
entrez:841830Gene3D:3.40.50.1110GeneID:841830Genevisible:Q9SSA7
GO:GO:0005576GO:GO:0016042GO:GO:0016298Gramene:AT1G53920.1
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF262HOGENOM:HOG000237649InParanoid:Q9SSA7
InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT1G53920OMA:HYKKVER
PaxDb:Q9SSA7Pfam:PF00657Pfam:Q9SSA7PhylomeDB:Q9SSA7
PIR:E96579PRIDE:Q9SSA7PRO:PR:Q9SSA7ProteinModelPortal:Q9SSA7
Proteomes:UP000006548RefSeq:NP_175795.2STRING:3702.AT1G53920.1SUPFAM:SSF52266
TAIR:AT1G53920tair10-symbols:GLIP5TMHMM:TMhelixUniGene:At.37314
UniProt:Q9SSA7
Coordinates (TAIR10) chr1:+:20137725..20139637
Molecular Weight (calculated) 43460.10 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.21
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MRESTLMEKV TRRTISSFIF FIVSSTILFL AGKSSAKISH NGDNNVTALF LFGDSFLDAG NNNYINTTTL DQANFPPYGQ TFFGLPTGRF SDGRLISDFI
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)