AT5G62070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : IQ-domain 23 | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
IQ-domain 23 (IQD23); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 24 (TAIR:AT5G07240.1); Has 854 Blast hits to 833 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 7; Plants - 775; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:24930057..24932451 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44273.50 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 11.04 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||
Length | 403 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN 101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS 201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS 301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS 401: FLV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)